/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs

BACK

SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1645126414 100.00 % 822563207 100.00 % 822563207 100.00 %
General Reads 1580816995 96.09 % 793541695 96.47 % 787275300 95.71 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1545581 0.09 % 779041 0.09 % 766540 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 62763838 3.82 % 28242471 3.43 % 34521367 4.20 %
Bisulfite_reads C2T 804611041 48.91 % 403770027 49.09 % 400841014 48.73 %
Bisulfite_reads G2A 777751535 47.28 % 390550709 47.48 % 387200826 47.07 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 568101116
Average Unique 69.06 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 62654408213 38.20 % 24596650674 30.32 % 38057757539 45.90 %
Base Counts Overall C 19399375038 11.83 % 1339752791 1.65 % 18059622247 21.78 %
Base Counts Overall G 19292083119 11.76 % 18005162375 22.19 % 1286920744 1.55 %
Base Counts Overall T 60915796118 37.14 % 36350297025 44.81 % 24565499093 29.63 %
Base Counts Overall N 1773394500 1.08 % 835341813 1.03 % 938052687 1.13 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.99444794465419
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 677419213



Mapping Quality

Mapping Quality Histogram
K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612417.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612430.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612439.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612274.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612269.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612158.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612205.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612251.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612308.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612242.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612192.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612348.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612178.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612412.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612165.41
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612252.41