/EXTERNAL DEEP/methylation/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25973520 |
19118623 |
73.61 % |
| NonRefCpG |
304007 |
157302 |
51.74 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7290273 |
14.32 % |
4739383 |
11.08 % |
112586 |
20.06 % |
41473 |
10.90 % |
| Intermediate (0.3-0.7) |
11766530 |
23.12 % |
9274498 |
21.68 % |
151213 |
26.94 % |
93941 |
24.69 % |
| Methylated (0.7-1) |
31846392 |
62.56 % |
28763909 |
67.24 % |
297480 |
53.00 % |
245036 |
64.41 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.800 |
|
0.820 |
|
0.720 |
|
0.800 |
|