/EXTERNAL DEEP/K009025_K009026_K009027_3_lane_gembs/52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612370.52

BACK

SAMPLE K009025_K009026_K009027_3_lane_gembs LANE 52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612370.52

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 345328714 100.00 % 172664357 100.00 % 172664357 100.00 %
General Reads 341365084 98.85 % 171563380 99.36 % 169801704 98.34 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 390358 0.11 % 196425 0.11 % 193933 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3573272 1.03 % 904552 0.52 % 2668720 1.55 %
Bisulfite_reads C2T 173730649 50.31 % 87296024 50.56 % 86434625 50.06 %
Bisulfite_reads G2A 168024793 48.66 % 84463781 48.92 % 83561012 48.40 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 137135928
Average Unique 79.42 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14046673994 39.88 % 6125504363 34.78 % 7921169631 44.98 %
Base Counts Overall C 3440787234 9.77 % 119846753 0.68 % 3320940481 18.86 %
Base Counts Overall G 3486974161 9.90 % 3378310727 19.18 % 108663434 0.62 %
Base Counts Overall T 13898786939 39.46 % 7813689405 44.37 % 6085097534 34.55 %
Base Counts Overall N 350306500 0.99 % 174413166 0.99 % 175893334 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9944882358345932
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 152808774



Mapping Quality

Mapping Quality Histogram
52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612370.52.mapq.png



Read Length

Read Length Reads
101 172664357
101 172664357



Insert Size Plot

Insert Size Histogram
52_Hf3b.Bisulfite-Seq.DNA_methylation.EGAX00001612370.52.isize.png