/EXTERNAL DEEP/mapping_coverage/K009025_K009026_K009027_3_lane_gembs
BACK
SAMPLE K009025_K009026_K009027_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1051172027 |
100% |
99034179182 |
100% |
| Mapped |
1040551102 |
98.99 % |
97961465757 |
98.92 % |
| Passed |
718721532 |
68.37 % |
65456679187 |
66.10 % |
| NotPassed |
321829570 |
30.62 % |
32504786570 |
32.82 % |
| |
|
|
|
|
| LowMAPQ |
171994394 |
16.36 % |
17371433794 |
17.54 % |
| MateUnmapped |
10620925 |
1.01 % |
1072713425 |
1.08 % |
| Duplicate |
69157030 |
6.58 % |
6984860030 |
7.05 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
16660 |
0.00 % |
1682660 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
80661486 |
7.67 % |
8146810086 |
8.23 % |
| Unmapped |
10620925 |
1.01 % |
1072713425 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
72568015806 |
100% |
| Passed |
60961262363 |
84.01 % |
| Trimmed |
3244285507 |
4.47 % |
| Clipped |
210194415 |
0.29 % |
| Overlapping |
6901142204 |
9.51 % |
| LowQuality |
1251131317 |
1.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |