/EXTERNAL DEEP/K009028_K009029_K009030_3_lane_gembs/41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612255.41

BACK

SAMPLE K009028_K009029_K009030_3_lane_gembs LANE 41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612255.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 356427792 100.00 % 178213896 100.00 % 178213896 100.00 %
General Reads 343123327 96.27 % 172560883 96.83 % 170562444 95.71 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 148932 0.04 % 74915 0.04 % 74017 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13155533 3.69 % 5578098 3.13 % 7577435 4.25 %
Bisulfite_reads C2T 177189964 49.71 % 89085886 49.99 % 88104078 49.44 %
Bisulfite_reads G2A 166082295 46.60 % 83549912 46.88 % 82532383 46.31 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 134486299
Average Unique 75.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14152887007 38.93 % 6416859162 35.30 % 7736027845 42.56 %
Base Counts Overall C 4000853519 11.00 % 233009601 1.28 % 3767843918 20.73 %
Base Counts Overall G 3835888243 10.55 % 3622295033 19.93 % 213593210 1.18 %
Base Counts Overall T 13999213491 38.51 % 7725292522 42.50 % 6273920969 34.51 %
Base Counts Overall N 366792524 1.01 % 180361074 0.99 % 186431450 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9951209303583289
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 157796714



Mapping Quality

Mapping Quality Histogram
41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612255.41.mapq.png



Read Length

Read Length Reads
101 178213896
101 178213896



Insert Size Plot

Insert Size Histogram
41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612255.41.isize.png