/EXTERNAL DEEP/K009028_K009029_K009030_3_lane_gembs/41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612290.41

BACK

SAMPLE K009028_K009029_K009030_3_lane_gembs LANE 41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612290.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 408018218 100.00 % 204009109 100.00 % 204009109 100.00 %
General Reads 394953107 96.80 % 199344235 97.71 % 195608872 95.88 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 154168 0.04 % 78211 0.04 % 75957 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 12910943 3.16 % 4586663 2.25 % 8324280 4.08 %
Bisulfite_reads C2T 200447721 49.13 % 101136686 49.57 % 99311035 48.68 %
Bisulfite_reads G2A 194659554 47.71 % 98285760 48.18 % 96373794 47.24 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 130970946
Average Unique 64.20 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14651059950 35.20 % 5795497402 27.85 % 8855562548 42.56 %
Base Counts Overall C 6144558725 14.76 % 726043223 3.49 % 5418515502 26.04 %
Base Counts Overall G 6277629461 15.08 % 5421719471 26.05 % 855909990 4.11 %
Base Counts Overall T 14123031814 33.94 % 8657048026 41.60 % 5465983788 26.27 %
Base Counts Overall N 421578286 1.01 % 208620996 1.00 % 212957290 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9825611339931957
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 153400743



Mapping Quality

Mapping Quality Histogram
41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612290.41.mapq.png



Read Length

Read Length Reads
101 204009109
101 204009109



Insert Size Plot

Insert Size Histogram
41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612290.41.isize.png