/EXTERNAL DEEP/K009028_K009029_K009030_3_lane_gembs/41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612372.41

BACK

SAMPLE K009028_K009029_K009030_3_lane_gembs LANE 41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612372.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 372827788 100.00 % 186413894 100.00 % 186413894 100.00 %
General Reads 360753402 96.76 % 180911883 97.05 % 179841519 96.47 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 151865 0.04 % 76243 0.04 % 75622 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11922521 3.20 % 5425768 2.91 % 6496753 3.49 %
Bisulfite_reads C2T 185984303 49.88 % 93261275 50.03 % 92723028 49.74 %
Bisulfite_reads G2A 174920964 46.92 % 87726851 47.06 % 87194113 46.77 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 142085175
Average Unique 76.22 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15024364929 39.51 % 6751121479 35.51 % 8273243450 43.51 %
Base Counts Overall C 3932535881 10.34 % 223235371 1.17 % 3709300510 19.51 %
Base Counts Overall G 3958564292 10.41 % 3741013226 19.67 % 217551066 1.14 %
Base Counts Overall T 14733128613 38.74 % 8110972671 42.66 % 6622155942 34.83 %
Base Counts Overall N 379840661 1.00 % 187874441 0.99 % 191966220 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9948126082995932
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 166053800



Mapping Quality

Mapping Quality Histogram
41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612372.41.mapq.png



Read Length

Read Length Reads
101 186413894
101 186413894



Insert Size Plot

Insert Size Histogram
41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612372.41.isize.png