/EXTERNAL DEEP/K009028_K009029_K009030_3_lane_gembs

BACK

SAMPLE K009028_K009029_K009030_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1137273798 100.00 % 568636899 100.00 % 568636899 100.00 %
General Reads 1098829836 96.62 % 552817001 97.22 % 546012835 96.02 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 454965 0.04 % 229369 0.04 % 225596 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 37988997 3.34 % 15590529 2.74 % 22398468 3.94 %
Bisulfite_reads C2T 563621988 49.56 % 283483847 49.85 % 280138141 49.26 %
Bisulfite_reads G2A 535662813 47.10 % 269562523 47.41 % 266100290 46.80 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 407542420
Average Unique 71.67 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43828311886 37.78 % 18963478043 32.70 % 24864833843 42.87 %
Base Counts Overall C 14077948125 12.14 % 1182288195 2.04 % 12895659930 22.23 %
Base Counts Overall G 14072081996 12.13 % 12785027730 22.04 % 1287054266 2.22 %
Base Counts Overall T 42855373918 36.94 % 24493313219 42.23 % 18362060699 31.66 %
Base Counts Overall N 1168211471 1.01 % 576856511 0.99 % 591354960 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9906305697362884
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 477251257



Mapping Quality

Mapping Quality Histogram
K009028_K009029_K009030_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K009028_K009029_K009030_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612372.41
41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612255.41
41_Hm08.Bisulfite-Seq.DNA_methylation.EGAX00001612290.41