/EXTERNAL DEEP/mapping_coverage/K009028_K009029_K009030_3_lane_gembs
BACK
SAMPLE K009028_K009029_K009030_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1036181750 |
100% |
100376400596 |
100% |
| Mapped |
1021315821 |
98.57 % |
98874941767 |
98.50 % |
| Passed |
694013065 |
66.98 % |
65817363411 |
65.57 % |
| NotPassed |
327302756 |
31.59 % |
33057578356 |
32.93 % |
| |
|
|
|
|
| LowMAPQ |
208613466 |
20.13 % |
21069960066 |
20.99 % |
| MateUnmapped |
14865929 |
1.43 % |
1501458829 |
1.50 % |
| Duplicate |
63072401 |
6.09 % |
6370312501 |
6.35 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
24858 |
0.00 % |
2510658 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
55592031 |
5.37 % |
5614795131 |
5.59 % |
| Unmapped |
14865929 |
1.43 % |
1501458829 |
1.50 % |
Base Level Counts
| Bases |
# |
% |
| Total |
70069129962 |
100% |
| Passed |
61561098758 |
87.86 % |
| Trimmed |
3252980565 |
4.64 % |
| Clipped |
232441374 |
0.33 % |
| Overlapping |
4019325177 |
5.74 % |
| LowQuality |
1003284088 |
1.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |