/EXTERNAL DEEP/methylation/K009028_K009029_K009030_3_lane_gembs
BACK
SAMPLE K009028_K009029_K009030_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26323354 |
15688332 |
59.60 % |
| NonRefCpG |
345881 |
124982 |
36.13 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7760201 |
15.58 % |
3902153 |
10.56 % |
171007 |
27.20 % |
53762 |
14.86 % |
| Intermediate (0.3-0.7) |
13366495 |
26.83 % |
8420981 |
22.80 % |
183411 |
29.17 % |
97129 |
26.85 % |
| Methylated (0.7-1) |
28697707 |
57.60 % |
24618035 |
66.64 % |
274351 |
43.63 % |
210848 |
58.29 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.760 |
|
0.820 |
|
0.620 |
|
0.770 |
|