/EXTERNAL DEEP/K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs/41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612182.41

BACK

SAMPLE K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs LANE 41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612182.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	267805142	100.00 %	133902571	100.00 %	133902571	100.00 %
General Reads	265148088	99.01 %	133142620	99.43 %	132005468	98.58 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	57054	0.02 %	28696	0.02 %	28358	0.02 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	2600000	0.97 %	731255	0.55 %	1868745	1.40 %
Bisulfite_reads C2T	136259673	50.88 %	68382970	51.07 %	67876703	50.69 %
Bisulfite_reads G2A	128945469	48.15 %	64788346	48.38 %	64157123	47.91 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	98850678
Average Unique	73.82 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	10157297693	37.18 %	4514089470	33.05 %	5643208223	41.32 %
Base Counts Overall C	3378788938	12.37 %	136840498	1.00 %	3241948440	23.74 %
Base Counts Overall G	3455925526	12.65 %	3328002376	24.37 %	127923150	0.94 %
Base Counts Overall T	10016721597	36.67 %	5542541337	40.58 %	4474180260	32.76 %
Base Counts Overall N	307390730	1.13 %	136588561	1.00 %	170802169	1.25 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.994598333180412
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	124263651

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	133902571
101	133902571

Insert Size Plot

Insert Size Histogram