/EXTERNAL DEEP/K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs/41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612314.41

BACK

SAMPLE K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs LANE 41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612314.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	313219282	100.00 %	156609641	100.00 %	156609641	100.00 %
General Reads	305223381	97.45 %	153131160	97.78 %	152092221	97.12 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	602	0.00 %	333	0.00 %	269	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	7995299	2.55 %	3478148	2.22 %	4517151	2.88 %
Bisulfite_reads C2T	154963721	49.47 %	77732949	49.63 %	77230772	49.31 %
Bisulfite_reads G2A	150260262	47.97 %	75398544	48.14 %	74861718	47.80 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	100465518
Average Unique	64.15 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	11489620542	35.96 %	4420731052	27.67 %	7068889490	44.25 %
Base Counts Overall C	4361456806	13.65 %	502642375	3.15 %	3858814431	24.16 %
Base Counts Overall G	4625569042	14.48 %	3980152904	24.92 %	645416138	4.04 %
Base Counts Overall T	10999601441	34.43 %	6757121043	42.30 %	4242480398	26.56 %
Base Counts Overall N	472118933	1.48 %	313536008	1.96 %	158582925	0.99 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.6891133849909873
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	117386470

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	156609641
101	156609641

Insert Size Plot

Insert Size Histogram