/EXTERNAL DEEP/K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs/41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612341.41

BACK

SAMPLE K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs LANE 41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612341.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	191741910	100.00 %	95870955	100.00 %	95870955	100.00 %
General Reads	189237933	98.69 %	94689254	98.77 %	94548679	98.62 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	51637	0.03 %	25908	0.03 %	25729	0.03 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	2452340	1.28 %	1155793	1.21 %	1296547	1.35 %
Bisulfite_reads C2T	97579273	50.89 %	48818669	50.92 %	48760604	50.86 %
Bisulfite_reads G2A	91710297	47.83 %	45896493	47.87 %	45813804	47.79 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	68923204
Average Unique	71.89 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	7119840498	36.40 %	3170588029	32.42 %	3949252469	40.39 %
Base Counts Overall C	2551395720	13.05 %	108012535	1.10 %	2443383185	24.99 %
Base Counts Overall G	2573974978	13.16 %	2470758896	25.27 %	103216082	1.06 %
Base Counts Overall T	7022924594	35.91 %	3837272106	39.24 %	3185652488	32.58 %
Base Counts Overall N	289539030	1.48 %	192205844	1.97 %	97333186	1.00 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9702825015079425
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	88268709

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	95870955
101	95870955

Insert Size Plot

Insert Size Histogram