/EXTERNAL DEEP/K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs/41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612395.41

BACK

SAMPLE K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs LANE 41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612395.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	139459082	100.00 %	69729541	100.00 %	69729541	100.00 %
General Reads	133663697	95.84 %	67046090	96.15 %	66617607	95.54 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	29766	0.02 %	14935	0.02 %	14831	0.02 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	5765619	4.13 %	2668516	3.83 %	3097103	4.44 %
Bisulfite_reads C2T	69015876	49.49 %	34596723	49.62 %	34419153	49.36 %
Bisulfite_reads G2A	64677587	46.38 %	32464302	46.56 %	32213285	46.20 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	48363013
Average Unique	69.36 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	5201841428	36.57 %	2345797108	32.98 %	2856044320	40.16 %
Base Counts Overall C	1854745551	13.04 %	126262147	1.78 %	1728483404	24.30 %
Base Counts Overall G	1886200054	13.26 %	1769398652	24.88 %	116801402	1.64 %
Base Counts Overall T	5141454219	36.14 %	2800540057	39.38 %	2340914162	32.91 %
Base Counts Overall N	140585112	0.99 %	70415218	0.99 %	70169894	0.99 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9924469105154833
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	62225746

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	69729541
101	69729541

Insert Size Plot

Insert Size Histogram