/EXTERNAL DEEP/K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs/41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612432.41

BACK

SAMPLE K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs LANE 41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612432.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	328262940	100.00 %	164131470	100.00 %	164131470	100.00 %
General Reads	325238309	99.08 %	163127983	99.39 %	162110326	98.77 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	72374	0.02 %	36315	0.02 %	36059	0.02 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	2952257	0.90 %	967172	0.59 %	1985085	1.21 %
Bisulfite_reads C2T	168562578	51.35 %	84490443	51.48 %	84072135	51.22 %
Bisulfite_reads G2A	156748105	47.75 %	78673855	47.93 %	78074250	47.57 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	113115578
Average Unique	68.92 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	12201179817	36.44 %	5594359249	33.42 %	6606820568	39.46 %
Base Counts Overall C	4425133027	13.22 %	184935532	1.10 %	4240197495	25.33 %
Base Counts Overall G	4494973942	13.42 %	4323925125	25.83 %	171048817	1.02 %
Base Counts Overall T	12031260635	35.93 %	6472962184	38.66 %	5558298451	33.20 %
Base Counts Overall N	330272459	0.99 %	165227850	0.99 %	165044609	0.99 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9949623350696144
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	151249170

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	164131470
101	164131470

Insert Size Plot

Insert Size Histogram