/EXTERNAL DEEP/K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs/41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612447.41

BACK

SAMPLE K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs LANE 41_Hf05.Bisulfite-Seq.DNA_methylation.EGAX00001612447.41

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	137561216	100.00 %	68780608	100.00 %	68780608	100.00 %
General Reads	131704483	95.74 %	66063375	96.05 %	65641108	95.44 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	29134	0.02 %	14638	0.02 %	14496	0.02 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	5827599	4.24 %	2702595	3.93 %	3125004	4.54 %
Bisulfite_reads C2T	68013398	49.44 %	34093262	49.57 %	33920136	49.32 %
Bisulfite_reads G2A	63720219	46.32 %	31984751	46.50 %	31735468	46.14 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	47601459
Average Unique	69.21 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	5127922316	36.55 %	2312992716	32.97 %	2814929600	40.12 %
Base Counts Overall C	1832568731	13.06 %	126095369	1.80 %	1706473362	24.32 %
Base Counts Overall G	1863682865	13.28 %	1747408413	24.91 %	116274452	1.66 %
Base Counts Overall T	5068557999	36.12 %	2759722992	39.34 %	2308835007	32.91 %
Base Counts Overall N	138512121	0.99 %	69402526	0.99 %	69109595	0.99 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9929429763159525
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	61291054

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	68780608
101	68780608

Insert Size Plot

Insert Size Histogram