/EXTERNAL DEEP/mapping_coverage/K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs
BACK
SAMPLE K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1310475507 |
100% |
127117442720 |
100% |
| Mapped |
1299114298 |
99.13 % |
125969960611 |
99.10 % |
| Passed |
882135016 |
67.31 % |
83855053129 |
65.97 % |
| NotPassed |
416979282 |
31.82 % |
42114907482 |
33.13 % |
| |
|
|
|
|
| LowMAPQ |
319234554 |
24.36 % |
32242689954 |
25.36 % |
| MateUnmapped |
11361209 |
0.87 % |
1147482109 |
0.90 % |
| Duplicate |
39935176 |
3.05 % |
4033452776 |
3.17 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
249930 |
0.02 % |
25242930 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
57559622 |
4.39 % |
5813521822 |
4.57 % |
| Unmapped |
11361209 |
0.87 % |
1147482109 |
0.90 % |
Base Level Counts
| Bases |
# |
% |
| Total |
89071744359 |
100% |
| Passed |
78703007234 |
88.36 % |
| Trimmed |
4137639188 |
4.65 % |
| Clipped |
237728594 |
0.27 % |
| Overlapping |
4978962636 |
5.59 % |
| LowQuality |
1014406707 |
1.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |