/EXTERNAL DEEP/methylation/K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs
BACK
SAMPLE K009031_K009032_K009033_K009034_K009035_K009036_6_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26728497 |
19942112 |
74.61 % |
| NonRefCpG |
318219 |
162012 |
50.91 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7204575 |
13.94 % |
4249080 |
9.68 % |
120050 |
20.55 % |
44003 |
10.92 % |
| Intermediate (0.3-0.7) |
12083642 |
23.38 % |
9129079 |
20.81 % |
157032 |
26.88 % |
95883 |
23.80 % |
| Methylated (0.7-1) |
32389155 |
62.68 % |
30497711 |
69.51 % |
307037 |
52.56 % |
262931 |
65.27 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.800 |
|
0.840 |
|
0.720 |
|
0.810 |
|