/EXTERNAL DEEP/K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs/51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612531.51
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 40353634 | 100.00 % | 40353634 | 100.00 % | 0 | 0.00 % |
| General Reads | 39230555 | 97.22 % | 39230555 | 97.22 % | 0 | 0.00 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 6 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1123073 | 2.78 % | 1123073 | 2.78 % | 0 | 0.00 % |
| Bisulfite_reads C2T | 19925385 | 49.38 % | 19925385 | 49.38 % | 0 | 0.00 % |
| Bisulfite_reads G2A | 19305176 | 47.84 % | 19305176 | 47.84 % | 0 | 0.00 % |
| Concept | Value |
|---|---|
| Unique Fragments | 30065685 |
| Average Unique | 76.64 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 800827516 | 29.29 % | ||||
| Base Counts Overall C | 25057408 | 0.92 % | ||||
| Base Counts Overall G | 581496296 | 21.27 % | ||||
| Base Counts Overall T | 1284907786 | 47.00 % | ||||
| Base Counts Overall N | 41481051 | 1.52 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 78 | 374765 |
| 89 | 583128 |
| 41 | 490838 |
| 54 | 680153 |
| 28 | 96735 |
| 65 | 608501 |
| 31 | 116433 |
| 46 | 670499 |
| 22 | 73736 |
| 82 | 510011 |
| 56 | 675506 |
| 87 | 445598 |
| 67 | 595594 |
| 69 | 561674 |
| 48 | 667356 |
| 68 | 566362 |
| 71 | 522707 |
| 52 | 674604 |
| 84 | 1486515 |
| 32 | 118957 |
| 86 | 102133 |
| 59 | 624984 |
| 73 | 524393 |
| 42 | 549635 |
| 70 | 542305 |
| 45 | 646647 |
| 51 | 653303 |
| 64 | 613952 |
| 38 | 372575 |
| 49 | 661606 |
| 33 | 137564 |
| 40 | 442553 |
| 43 | 590508 |
| 30 | 105586 |
| 90 | 971922 |
| 85 | 892446 |
| 62 | 624200 |
| 72 | 522541 |
| 79 | 389039 |
| 77 | 382388 |
| 75 | 503627 |
| 74 | 527261 |
| 36 | 278265 |
| 66 | 595333 |
| 81 | 411096 |
| 34 | 178487 |
| 23 | 79147 |
| 63 | 608860 |
| 27 | 94324 |
| 47 | 684238 |
| 83 | 665435 |
| 26 | 97000 |
| 60 | 621718 |
| 80 | 394491 |
| 21 | 80358 |
| 39 | 409255 |
| 29 | 100678 |
| 50 | 657026 |
| 57 | 671054 |
| 92 | 3602472 |
| 37 | 330772 |
| 24 | 83102 |
| 25 | 86917 |
| 53 | 667192 |
| 20 | 74465 |
| 44 | 621608 |
| 61 | 605234 |
| 91 | 3388505 |
| 76 | 456923 |
| 35 | 224623 |
| 55 | 687745 |
| 88 | 351765 |
| 58 | 644706 |