/EXTERNAL DEEP/K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs/51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612532.51
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 144862861 | 100.00 % | 144862861 | 100.00 % | 0 | 0.00 % |
| General Reads | 141397069 | 97.61 % | 141397069 | 97.61 % | 0 | 0.00 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 11 | 0.00 % | 11 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3465781 | 2.39 % | 3465781 | 2.39 % | 0 | 0.00 % |
| Bisulfite_reads C2T | 71839085 | 49.59 % | 71839085 | 49.59 % | 0 | 0.00 % |
| Bisulfite_reads G2A | 69557995 | 48.02 % | 69557995 | 48.02 % | 0 | 0.00 % |
| Concept | Value |
|---|---|
| Unique Fragments | 108936243 |
| Average Unique | 77.04 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 2888968269 | 29.19 % | ||||
| Base Counts Overall C | 88866449 | 0.90 % | ||||
| Base Counts Overall G | 2105223402 | 21.27 % | ||||
| Base Counts Overall T | 4669150315 | 47.17 % | ||||
| Base Counts Overall N | 146297696 | 1.48 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 78 | 1658028 |
| 89 | 308775 |
| 41 | 1805901 |
| 54 | 2463374 |
| 28 | 332019 |
| 65 | 2172563 |
| 31 | 395271 |
| 46 | 2453401 |
| 22 | 246769 |
| 82 | 1252935 |
| 56 | 2437900 |
| 87 | 4860068 |
| 67 | 2129838 |
| 69 | 1994699 |
| 48 | 2443091 |
| 68 | 2027787 |
| 71 | 1849662 |
| 52 | 2442137 |
| 84 | 1381461 |
| 32 | 410230 |
| 86 | 2176893 |
| 59 | 2253234 |
| 73 | 1803183 |
| 95 | 11978028 |
| 42 | 2031795 |
| 70 | 1920051 |
| 45 | 2375783 |
| 51 | 2374905 |
| 64 | 2190910 |
| 38 | 1365592 |
| 49 | 2404135 |
| 33 | 481131 |
| 40 | 1629253 |
| 43 | 2167472 |
| 30 | 362549 |
| 90 | 1367584 |
| 85 | 1688085 |
| 62 | 2222441 |
| 72 | 1852904 |
| 79 | 1506384 |
| 77 | 1820525 |
| 75 | 1824845 |
| 74 | 1824218 |
| 36 | 1016599 |
| 66 | 2131778 |
| 81 | 1191164 |
| 34 | 637729 |
| 23 | 267971 |
| 63 | 2173071 |
| 27 | 321285 |
| 47 | 2510753 |
| 83 | 1296749 |
| 26 | 328723 |
| 60 | 2224888 |
| 80 | 1185246 |
| 21 | 268077 |
| 93 | 3041124 |
| 39 | 1503779 |
| 29 | 345343 |
| 50 | 2380927 |
| 57 | 2416585 |
| 92 | 1826002 |
| 37 | 1212573 |
| 24 | 278237 |
| 25 | 295718 |
| 53 | 2413166 |
| 20 | 248710 |
| 44 | 2282118 |
| 61 | 2161526 |
| 91 | 1080266 |
| 76 | 1828673 |
| 35 | 814435 |
| 55 | 2478410 |
| 94 | 10843034 |
| 88 | 2847774 |
| 58 | 2322619 |