/EXTERNAL DEEP/K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs/51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612554.51

BACK

SAMPLE K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs LANE 51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612554.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 366519710 100.00 % 183259855 100.00 % 183259855 100.00 %
General Reads 355199273 96.91 % 177981776 97.12 % 177217497 96.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 655 0.00 % 335 0.00 % 320 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11319782 3.09 % 5277744 2.88 % 6042038 3.30 %
Bisulfite_reads C2T 183911336 50.18 % 92149534 50.28 % 91761802 50.07 %
Bisulfite_reads G2A 171288592 46.73 % 85832577 46.84 % 85456015 46.63 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 42236920
Average Unique 23.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 10066424991 38.45 % 3740565199 29.26 % 6325859792 47.21 %
Base Counts Overall C 2983438943 11.39 % 167265359 1.31 % 2816173584 21.02 %
Base Counts Overall G 2863426485 10.94 % 2716752779 21.25 % 146673706 1.09 %
Base Counts Overall T 9884884585 37.75 % 5975910753 46.74 % 3908973832 29.17 %
Base Counts Overall N 385221995 1.47 % 184515732 1.44 % 200706263 1.50 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.06692108741154815
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 69718515



Mapping Quality

Mapping Quality Histogram
51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612554.51.mapq.png



Read Length

Read Length Reads
78 2151496
89 2557831
41 2171728
54 3029442
28 396054
65 2689273
31 468836
46 2986141
22 299511
82 1744135
56 3009851
98 14888326
87 1682988
67 2652697
69 2500959
48 2983555
68 2533273
71 2328274
52 2999220
84 1435006
32 488242
86 1576739
59 2798053
73 2268427
95 2282912
42 2452306
70 2416086
96 3806277
45 2890141
97 13088814
51 2915864
64 2706777
38 1631172
49 2944261
33 572896
40 1951940
43 2621424
30 430748
90 5509470
85 1522852
62 2762630
72 2328778
79 2152743
77 2258964
75 2300254
74 2295421
36 1206768
66 2642936
81 1889935
34 755484
23 321441
63 2698974
27 386139
47 3057081
83 1391393
26 393832
60 2766416
80 2050552
21 326194
93 1682306
39 1799120
29 410318
50 2928868
57 2986209
92 411119
37 1447346
24 332134
25 352562
53 2970270
20 303071
44 2772744
61 2684833
91 3308054
76 2256037
35 966547
55 3054450
94 1357152
88 1988910
58 2877873
78 1983729
89 1511800
41 2002238
54 2851561
28 222601
65 2514465
31 275041
46 2811989
22 102939
82 1728463
56 2829821
98 10515805
87 1590643
67 2471922
69 2322413
48 2807892
68 2350306
71 2130139
52 2816633
84 1607228
32 318668
86 1582772
59 2613884
73 2078635
95 2520957
42 2271924
70 2234285
96 4514452
45 2724701
97 4534613
51 2729951
64 2527764
38 1479231
49 2754841
33 392844
40 1788288
43 2448522
30 258206
90 1522296
85 1610680
62 2573745
72 2142226
79 1930764
77 2079324
75 2118312
74 2111093
36 1069748
66 2462871
81 1751519
34 587358
23 111823
63 2512387
27 201241
47 2887056
83 1606612
26 183913
60 2603477
80 1826966
21 96666
93 1516849
39 1664519
29 235648
50 2736375
57 2802659
92 1416862
37 1287690
99 28973747
24 133494
25 158122
53 2789932
20 95994
44 2594308
61 2536669
91 1451662
76 2071810
35 808754
55 2874110
94 1663824
88 1534607
58 2699977



Insert Size Plot

Insert Size Histogram
51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612554.51.isize.png