/EXTERNAL DEEP/K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs/51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612555.51

BACK

SAMPLE K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs LANE 51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612555.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 302800888 100.00 % 151400444 100.00 % 151400444 100.00 %
General Reads 294840074 97.37 % 147759398 97.60 % 147080676 97.15 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 325 0.00 % 172 0.00 % 153 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7960489 2.63 % 3640874 2.40 % 4319615 2.85 %
Bisulfite_reads C2T 152689676 50.43 % 76519810 50.54 % 76169866 50.31 %
Bisulfite_reads G2A 142150723 46.95 % 71239760 47.05 % 70910963 46.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 34412005
Average Unique 22.73 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 8278070017 38.43 % 3076049851 29.21 % 5202020166 47.25 %
Base Counts Overall C 2437647962 11.32 % 122758611 1.17 % 2314889351 21.03 %
Base Counts Overall G 2344138552 10.88 % 2245420623 21.33 % 98717929 0.90 %
Base Counts Overall T 8147964853 37.83 % 4931616408 46.84 % 3216348445 29.21 %
Base Counts Overall N 330868348 1.54 % 153606258 1.46 % 177262090 1.61 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.06192305918545054
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 57207565



Mapping Quality

Mapping Quality Histogram
51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612555.51.mapq.png



Read Length

Read Length Reads
78 1780928
89 2088602
41 1816053
54 2531875
28 322194
65 2244613
31 382677
46 2494044
22 239919
82 1451998
56 2516486
98 12051291
87 1387331
67 2209312
69 2085900
48 2494138
68 2106021
71 1936148
52 2505937
84 1191389
32 402220
86 1299988
59 2333834
73 1884998
95 1825023
42 2052675
70 2010448
96 3008605
45 2411241
97 10548690
51 2436364
64 2258417
38 1364848
49 2459212
33 471622
40 1633661
43 2200621
30 351612
90 4521425
85 1258288
62 2304426
72 1939187
79 1786270
77 1871887
75 1908186
74 1904534
36 1007248
66 2201251
81 1568245
34 628600
23 258691
63 2247254
27 313647
47 2554717
83 1154729
26 320701
60 2308783
80 1699857
21 261630
93 1367140
39 1505361
29 333366
50 2439027
57 2497528
92 325697
37 1206946
24 267776
25 286485
53 2483906
20 243145
44 2320523
61 2243813
91 2728093
76 1868222
35 808537
55 2552807
94 1087653
88 1625803
58 2398125
78 1657291
89 1257467
41 1694326
54 2395354
28 177784
65 2111579
31 220049
46 2376582
22 82753
82 1450448
56 2378394
98 8308677
87 1325843
67 2076659
69 1955385
48 2371397
68 1971372
71 1789341
52 2366111
84 1344403
32 261251
86 1319812
59 2189416
73 1743089
95 2019579
42 1924747
70 1875482
96 3584726
45 2335330
97 3558253
51 2292394
64 2121196
38 1241141
49 2320876
33 321415
40 1514369
43 2078620
30 206992
90 1264072
85 1342617
62 2157977
72 1798252
79 1614504
77 1736796
75 1771958
74 1766480
36 875731
66 2065489
81 1469564
34 485321
23 89632
63 2107816
27 160018
47 2434615
83 1344000
26 148042
60 2174356
80 1529124
21 78034
93 1217193
39 1374067
29 188879
50 2295160
57 2354967
92 1150738
37 1084998
99 23238303
24 106394
25 127009
53 2346600
20 77698
44 2208670
61 2104480
91 1196851
76 1731936
35 673338
55 2414809
94 1335964
88 1278315
58 2259774



Insert Size Plot

Insert Size Histogram
51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612555.51.isize.png