/EXTERNAL DEEP/K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs/51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612556.51
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 269810928 | 100.00 % | 134905464 | 100.00 % | 134905464 | 100.00 % |
| General Reads | 264356639 | 97.98 % | 133408524 | 98.89 % | 130948115 | 97.07 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 15 | 0.00 % | 7 | 0.00 % | 8 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5454274 | 2.02 % | 1496933 | 1.11 % | 3957341 | 2.93 % |
| Bisulfite_reads C2T | 140980059 | 52.25 % | 71109119 | 52.71 % | 69870940 | 51.79 % |
| Bisulfite_reads G2A | 123376595 | 45.73 % | 62299412 | 46.18 % | 61077183 | 45.27 % |
| Concept | Value |
|---|---|
| Unique Fragments | 77378241 |
| Average Unique | 57.36 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 5142935328 | 38.31 % | 1886003405 | 28.96 % | 3256931923 | 47.11 % |
| Base Counts Overall C | 1537728320 | 11.45 % | 64128024 | 0.98 % | 1473600296 | 21.32 % |
| Base Counts Overall G | 1457395348 | 10.85 % | 1401017462 | 21.51 % | 56377886 | 0.82 % |
| Base Counts Overall T | 5017954891 | 37.37 % | 3026836132 | 46.47 % | 1991118759 | 28.80 % |
| Base Counts Overall N | 270099974 | 2.01 % | 134966546 | 2.07 % | 135133428 | 1.95 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 107178751 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 44 | 11654251 |
| 37 | 1005163 |
| 41 | 2111063 |
| 28 | 511497 |
| 31 | 586804 |
| 36 | 935181 |
| 46 | 859192 |
| 45 | 6866703 |
| 34 | 832432 |
| 23 | 475234 |
| 48 | 2957793 |
| 27 | 510213 |
| 47 | 3391213 |
| 49 | 4851119 |
| 52 | 37951141 |
| 30 | 536700 |
| 29 | 527091 |
| 21 | 485273 |
| 20 | 447642 |
| 39 | 1443515 |
| 50 | 8459544 |
| 42 | 3121010 |
| 25 | 489116 |
| 22 | 437544 |
| 24 | 475923 |
| 26 | 531041 |
| 51 | 32478895 |
| 38 | 1224518 |
| 32 | 584141 |
| 33 | 707391 |
| 40 | 1746115 |
| 43 | 4823126 |
| 35 | 887880 |
| 44 | 2163054 |
| 37 | 984484 |
| 41 | 1540022 |
| 28 | 159857 |
| 31 | 200019 |
| 36 | 820653 |
| 46 | 2208619 |
| 45 | 2207998 |
| 34 | 452789 |
| 23 | 74919 |
| 48 | 2684889 |
| 27 | 144182 |
| 47 | 2445777 |
| 49 | 4387824 |
| 52 | 21616755 |
| 30 | 185990 |
| 29 | 169343 |
| 21 | 63720 |
| 20 | 63027 |
| 39 | 1247104 |
| 50 | 8907447 |
| 42 | 1765019 |
| 25 | 110238 |
| 22 | 67941 |
| 24 | 90556 |
| 26 | 130368 |
| 53 | 66029304 |
| 51 | 8365316 |
| 38 | 1124048 |
| 32 | 237802 |
| 33 | 296682 |
| 40 | 1374338 |
| 43 | 1953043 |
| 35 | 632337 |
| Insert Size Histogram |
|---|
 |