/EXTERNAL DEEP/mapping_coverage/K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs
BACK
SAMPLE K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1213083304 |
100% |
64169567508 |
100% |
| Mapped |
1204665852 |
99.31 % |
63626328502 |
99.15 % |
| Passed |
544705678 |
44.90 % |
24265246108 |
37.81 % |
| NotPassed |
659960174 |
54.40 % |
39361082394 |
61.34 % |
| |
|
|
|
|
| LowMAPQ |
607627481 |
50.09 % |
36781996869 |
57.32 % |
| MateUnmapped |
8417452 |
0.69 % |
474830144 |
0.74 % |
| Duplicate |
30168881 |
2.49 % |
1062341674 |
1.66 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
5080436 |
0.42 % |
351720216 |
0.55 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17083376 |
1.41 % |
1165023635 |
1.82 % |
| Unmapped |
8417452 |
0.69 % |
543239006 |
0.85 % |
Base Level Counts
| Bases |
# |
% |
| Total |
28803717598 |
100% |
| Passed |
21300208657 |
73.95 % |
| Trimmed |
1726370672 |
5.99 % |
| Clipped |
68531782 |
0.24 % |
| Overlapping |
5556586075 |
19.29 % |
| LowQuality |
152020412 |
0.53 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |