/EXTERNAL DEEP/methylation/K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs
BACK
SAMPLE K009037_K009038_K009039_K009040_K009041_K009042_5_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
24767648 |
3408000 |
13.76 % |
| NonRefCpG |
369148 |
9586 |
2.60 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
9077757 |
19.66 % |
1254018 |
10.43 % |
257013 |
39.52 % |
9248 |
16.09 % |
| Intermediate (0.3-0.7) |
16657835 |
36.07 % |
3261683 |
27.12 % |
225571 |
34.69 % |
17240 |
29.99 % |
| Methylated (0.7-1) |
20446327 |
44.27 % |
7509035 |
62.45 % |
167736 |
25.79 % |
30993 |
53.92 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.650 |
|
0.780 |
|
0.420 |
|
0.730 |
|