/EXTERNAL DEEP/K009043_K009044_K009045_3_lane_gembs/41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612190.41

BACK

SAMPLE K009043_K009044_K009045_3_lane_gembs LANE 41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612190.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 385622344 100.00 % 192811172 100.00 % 192811172 100.00 %
General Reads 381173182 98.85 % 191237178 99.18 % 189936004 98.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 339993 0.09 % 170538 0.09 % 169455 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4109169 1.07 % 1403456 0.73 % 2705713 1.40 %
Bisulfite_reads C2T 196344398 50.92 % 98485401 51.08 % 97858997 50.75 %
Bisulfite_reads G2A 185168777 48.02 % 92922315 48.19 % 92246462 47.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 156944231
Average Unique 81.40 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15193379538 38.63 % 6575605521 33.44 % 8617774017 43.82 %
Base Counts Overall C 4348908199 11.06 % 176193651 0.90 % 4172714548 21.22 %
Base Counts Overall G 4418113414 11.23 % 4262832228 21.68 % 155281186 0.79 %
Base Counts Overall T 14981214241 38.09 % 8457740791 43.01 % 6523473450 33.17 %
Base Counts Overall N 391863696 1.00 % 194367353 0.99 % 197496343 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9937375379543953
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 183331628



Mapping Quality

Mapping Quality Histogram
41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612190.41.mapq.png



Read Length

Read Length Reads
101 192811172
101 192811172



Insert Size Plot

Insert Size Histogram
41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612190.41.isize.png