/EXTERNAL DEEP/K009043_K009044_K009045_3_lane_gembs/41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612260.41

BACK

SAMPLE K009043_K009044_K009045_3_lane_gembs LANE 41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612260.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 438170726 100.00 % 219085363 100.00 % 219085363 100.00 %
General Reads 425466118 97.10 % 213747125 97.56 % 211718993 96.64 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 687751 0.16 % 347412 0.16 % 340339 0.16 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 12016857 2.74 % 4990826 2.28 % 7026031 3.21 %
Bisulfite_reads C2T 217607693 49.66 % 109297163 49.89 % 108310530 49.44 %
Bisulfite_reads G2A 208546176 47.59 % 104797374 47.83 % 103748802 47.36 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 139594421
Average Unique 63.72 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 16201142173 36.25 % 6268408130 28.05 % 9932734043 44.45 %
Base Counts Overall C 6055228317 13.55 % 696892833 3.12 % 5358335484 23.98 %
Base Counts Overall G 6467328060 14.47 % 5600486349 25.06 % 866841711 3.88 %
Base Counts Overall T 15525531260 34.74 % 9561278892 42.79 % 5964252368 26.69 %
Base Counts Overall N 444184242 0.99 % 219640822 0.98 % 224543420 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9812026447346308
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 163815722



Mapping Quality

Mapping Quality Histogram
41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612260.41.mapq.png



Read Length

Read Length Reads
101 219085363
101 219085363



Insert Size Plot

Insert Size Histogram
41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612260.41.isize.png