/EXTERNAL DEEP/K009043_K009044_K009045_3_lane_gembs/41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612360.41

BACK

SAMPLE K009043_K009044_K009045_3_lane_gembs LANE 41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612360.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 386687400 100.00 % 193343700 100.00 % 193343700 100.00 %
General Reads 382199263 98.84 % 191760995 99.18 % 190438268 98.50 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 342757 0.09 % 171950 0.09 % 170807 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4145380 1.07 % 1410755 0.73 % 2734625 1.41 %
Bisulfite_reads C2T 196855643 50.91 % 98746924 51.07 % 98108719 50.74 %
Bisulfite_reads G2A 185686377 48.02 % 93186021 48.20 % 92500356 47.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 157371414
Average Unique 81.39 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15234723041 38.63 % 6592929529 33.43 % 8641793512 43.82 %
Base Counts Overall C 4359999277 11.05 % 176924313 0.90 % 4183074964 21.21 %
Base Counts Overall G 4431777657 11.24 % 4275615279 21.68 % 156162378 0.79 %
Base Counts Overall T 15020480868 38.08 % 8481071694 43.01 % 6539409174 33.16 %
Base Counts Overall N 395133957 1.00 % 194516585 0.99 % 200617372 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9937170257502785
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 183813441



Mapping Quality

Mapping Quality Histogram
41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612360.41.mapq.png



Read Length

Read Length Reads
101 193343700
101 193343700



Insert Size Plot

Insert Size Histogram
41_Hf11.Bisulfite-Seq.DNA_methylation.EGAX00001612360.41.isize.png