/EXTERNAL DEEP/mapping_coverage/K009043_K009044_K009045_3_lane_gembs
BACK
SAMPLE K009043_K009044_K009045_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1149842743 |
100% |
110498015424 |
100% |
| Mapped |
1139198934 |
99.07 % |
109422990715 |
99.03 % |
| Passed |
833871753 |
72.52 % |
78584945434 |
71.12 % |
| NotPassed |
305327181 |
26.55 % |
30838045281 |
27.91 % |
| |
|
|
|
|
| LowMAPQ |
232343580 |
20.21 % |
23466701580 |
21.24 % |
| MateUnmapped |
10643809 |
0.93 % |
1075024709 |
0.97 % |
| Duplicate |
39357803 |
3.42 % |
3975138103 |
3.60 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
28270 |
0.00 % |
2855270 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
33597528 |
2.92 % |
3393350328 |
3.07 % |
| Unmapped |
10643809 |
0.93 % |
1075024709 |
0.97 % |
Base Level Counts
| Bases |
# |
% |
| Total |
84195989155 |
100% |
| Passed |
73605974256 |
87.42 % |
| Trimmed |
3898589862 |
4.63 % |
| Clipped |
235924256 |
0.28 % |
| Overlapping |
5375119465 |
6.38 % |
| LowQuality |
1080381316 |
1.28 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |