/EXTERNAL DEEP/methylation/K009043_K009044_K009045_3_lane_gembs
BACK
SAMPLE K009043_K009044_K009045_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26536020 |
19258052 |
72.57 % |
| NonRefCpG |
310614 |
153649 |
49.47 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7459144 |
14.50 % |
4443047 |
10.34 % |
120699 |
21.17 % |
44577 |
11.54 % |
| Intermediate (0.3-0.7) |
12842996 |
24.97 % |
9665407 |
22.50 % |
160398 |
28.14 % |
98517 |
25.51 % |
| Methylated (0.7-1) |
31141624 |
60.54 % |
28850773 |
67.16 % |
288960 |
50.69 % |
243130 |
62.95 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.780 |
|
0.820 |
|
0.700 |
|
0.790 |
|