/EXTERNAL DEEP/mapping_coverage/K009046_K009047_K009048_3_lane_gembs
BACK
SAMPLE K009046_K009047_K009048_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
994058875 |
100% |
93662875984 |
100% |
| Mapped |
980997652 |
98.69 % |
92343692461 |
98.59 % |
| Passed |
758325594 |
76.29 % |
69853814603 |
74.58 % |
| NotPassed |
222672058 |
22.40 % |
22489877858 |
24.01 % |
| |
|
|
|
|
| LowMAPQ |
160462734 |
16.14 % |
16206736134 |
17.30 % |
| MateUnmapped |
13061223 |
1.31 % |
1319183523 |
1.41 % |
| Duplicate |
23360647 |
2.35 % |
2359425347 |
2.52 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
17054 |
0.00 % |
1722454 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
38831623 |
3.91 % |
3921993923 |
4.19 % |
| Unmapped |
13061223 |
1.31 % |
1319183523 |
1.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
76570809628 |
100% |
| Passed |
65193635260 |
85.14 % |
| Trimmed |
3438073756 |
4.49 % |
| Clipped |
228106042 |
0.30 % |
| Overlapping |
6488888983 |
8.47 % |
| LowQuality |
1222105587 |
1.60 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |