/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612141.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612141.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 104839654 | 100.00 % | 52419827 | 100.00 % | 52419827 | 100.00 % |
| General Reads | 97081011 | 92.60 % | 49106918 | 93.68 % | 47974093 | 91.52 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 462 | 0.00 % | 237 | 0.00 % | 225 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7758181 | 7.40 % | 3312672 | 6.32 % | 4445509 | 8.48 % |
| Bisulfite_reads C2T | 49008690 | 46.75 % | 24743398 | 47.20 % | 24265292 | 46.29 % |
| Bisulfite_reads G2A | 48072783 | 45.85 % | 24363757 | 46.48 % | 23709026 | 45.23 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 6344702 |
| Average Unique | 12.10 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 4285508219 | 40.08 % | 1724356883 | 32.25 % | 2561151336 | 47.90 % |
| Base Counts Overall C | 1082765932 | 10.13 % | 82878199 | 1.55 % | 999887733 | 18.70 % |
| Base Counts Overall G | 1043190971 | 9.76 % | 990586749 | 18.53 % | 52604222 | 0.98 % |
| Base Counts Overall T | 4154152364 | 38.85 % | 2491452851 | 46.60 % | 1662699513 | 31.10 % |
| Base Counts Overall N | 128027222 | 1.20 % | 57547672 | 1.08 % | 70479550 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.674755731640763 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 10930701 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 101 | 52419827 |
| 101 | 52419827 |
Insert Size Plot
| Insert Size Histogram |
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