/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612156.41

BACK

SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612156.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 90768494 100.00 % 45384247 100.00 % 45384247 100.00 %
General Reads 87899373 96.84 % 44006169 96.96 % 43893204 96.71 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2 0.00 % 1 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 2869119 3.16 % 1378077 3.04 % 1491042 3.29 %
Bisulfite_reads C2T 44786867 49.34 % 22420502 49.40 % 22366365 49.28 %
Bisulfite_reads G2A 43112508 47.50 % 21585668 47.56 % 21526840 47.43 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 33439081
Average Unique 73.68 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3140884136 36.97 % 1147018547 28.24 % 1993865589 44.97 %
Base Counts Overall C 1172834370 13.81 % 105746645 2.60 % 1067087725 24.07 %
Base Counts Overall G 1157459699 13.62 % 1036010432 25.51 % 121449267 2.74 %
Base Counts Overall T 2932869676 34.52 % 1727371351 42.53 % 1205498325 27.19 %
Base Counts Overall N 91124728 1.07 % 45390178 1.12 % 45734550 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 39660955



Mapping Quality

Mapping Quality Histogram
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612156.41.mapq.png



Read Length

Read Length Reads
70 136117
86 206398
73 159049
24 120215
20 112887
45 112898
97 11390036
89 1081343
52 114997
93 648869
77 139651
59 137602
79 129271
82 73993
31 109121
74 167455
80 124035
96 2845493
84 100741
39 110240
43 121757
63 117090
91 1202766
46 112072
40 113083
58 131427
30 106592
49 115379
38 112720
60 133621
57 122966
75 162388
53 114821
69 138973
90 2469155
88 574859
27 110027
36 110860
71 142296
32 108836
33 110562
81 104482
47 111487
54 118563
76 154925
41 114128
78 135080
51 116177
29 108221
44 118853
95 1277083
25 120385
85 136912
22 107978
72 134112
21 112884
56 118808
98 14277639
23 108750
65 121869
48 113650
61 125904
42 117930
35 108932
87 295372
92 348495
28 110248
34 107584
83 70388
94 844688
26 112832
55 116101
37 110495
67 135501
68 138041
50 116364
64 119656
66 122466
62 118603
70 61358
86 50333
73 33222
24 9552
20 9278
45 20983
97 3194077
89 101047
52 20389
93 229526
77 32543
59 23951
79 34330
82 37243
31 14272
74 32342
80 34905
96 3006311
84 42140
39 16939
43 18316
63 40707
91 145735
46 22943
40 18667
58 23854
30 13128
49 20435
38 15393
60 24477
57 22868
75 31876
53 20460
69 67919
90 159002
99 26322289
88 74115
27 11524
36 14655
71 46998
32 14787
33 14908
81 35926
47 22969
54 21163
76 31790
41 19513
78 33559
51 19320
29 12397
44 19994
95 1095369
25 10298
85 45687
22 9390
72 37950
21 9161
56 23194
98 8687512
23 9139
65 42440
48 22405
61 27502
42 16906
35 15459
87 57513
92 138434
28 12513
34 15015
83 39186
94 391827
26 11109
55 21827
37 14962
67 54928
68 65253
50 19611
64 42680
66 46091
62 34458



Insert Size Plot

Insert Size Histogram
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612156.41.isize.png