/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612228.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612228.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 156557866 | 100.00 % | 78278933 | 100.00 % | 78278933 | 100.00 % |
| General Reads | 153896048 | 98.30 % | 77425343 | 98.91 % | 76470705 | 97.69 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 282539 | 0.18 % | 142457 | 0.18 % | 140082 | 0.18 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2379279 | 1.52 % | 711133 | 0.91 % | 1668146 | 2.13 % |
| Bisulfite_reads C2T | 79787715 | 50.96 % | 40129653 | 51.26 % | 39658062 | 50.66 % |
| Bisulfite_reads G2A | 74390872 | 47.52 % | 37438147 | 47.83 % | 36952725 | 47.21 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 58999332 |
| Average Unique | 75.37 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 6075879968 | 38.05 % | 2380540323 | 29.81 % | 3695339645 | 46.28 % |
| Base Counts Overall C | 1852309728 | 11.60 % | 76147170 | 0.95 % | 1776162558 | 22.25 % |
| Base Counts Overall G | 1887283170 | 11.82 % | 1827206854 | 22.88 % | 60076316 | 0.75 % |
| Base Counts Overall T | 5987855771 | 37.50 % | 3622026663 | 45.36 % | 2365829108 | 29.63 % |
| Base Counts Overall N | 165573695 | 1.04 % | 78530156 | 0.98 % | 87043539 | 1.09 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9947715347452283 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 71087241 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 78278933 |
| 101 | 78278933 |
Insert Size Plot
| Insert Size Histogram |
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