/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612318.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612318.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 83714026 | 100.00 % | 41857013 | 100.00 % | 41857013 | 100.00 % |
| General Reads | 77600212 | 92.70 % | 39149623 | 93.53 % | 38450589 | 91.86 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 249 | 0.00 % | 126 | 0.00 % | 123 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6113565 | 7.30 % | 2707264 | 6.47 % | 3406301 | 8.14 % |
| Bisulfite_reads C2T | 39207823 | 46.84 % | 19746033 | 47.17 % | 19461790 | 46.50 % |
| Bisulfite_reads G2A | 38392638 | 45.86 % | 19403716 | 46.36 % | 18988922 | 45.37 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5118543 |
| Average Unique | 12.23 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3436657269 | 40.25 % | 1391092826 | 32.58 % | 2045564443 | 47.91 % |
| Base Counts Overall C | 850147347 | 9.96 % | 64421091 | 1.51 % | 785726256 | 18.40 % |
| Base Counts Overall G | 840666702 | 9.85 % | 785891795 | 18.41 % | 54774907 | 1.28 % |
| Base Counts Overall T | 3319465906 | 38.87 % | 1985863272 | 46.51 % | 1333602634 | 31.24 % |
| Base Counts Overall N | 91893428 | 1.08 % | 42146342 | 0.99 % | 49747086 | 1.17 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9952876622667055 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 9056935 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 101 | 41857013 |
| 101 | 41857013 |
Insert Size Plot
| Insert Size Histogram |
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