/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612327.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612327.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 316140030 | 100.00 % | 158070015 | 100.00 % | 158070015 | 100.00 % |
| General Reads | 300990138 | 95.21 % | 151117873 | 95.60 % | 149872265 | 94.81 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 505735 | 0.16 % | 254965 | 0.16 % | 250770 | 0.16 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 14644157 | 4.63 % | 6697177 | 4.24 % | 7946980 | 5.03 % |
| Bisulfite_reads C2T | 153592638 | 48.58 % | 77090936 | 48.77 % | 76501702 | 48.40 % |
| Bisulfite_reads G2A | 147903235 | 46.78 % | 74281902 | 46.99 % | 73621333 | 46.58 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 95426384 |
| Average Unique | 60.37 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 11271077599 | 34.95 % | 4398025197 | 27.28 % | 6873052402 | 42.63 % |
| Base Counts Overall C | 4797731290 | 14.88 % | 715466974 | 4.44 % | 4082264316 | 25.32 % |
| Base Counts Overall G | 5069021850 | 15.72 % | 4225462068 | 26.21 % | 843559782 | 5.23 % |
| Base Counts Overall T | 10786818995 | 33.45 % | 6624750394 | 41.09 % | 4162068601 | 25.81 % |
| Base Counts Overall N | 321633326 | 1.00 % | 159436897 | 0.99 % | 162196429 | 1.01 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.7870456609742862 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 113293405 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 158070015 |
| 101 | 158070015 |
Insert Size Plot
| Insert Size Histogram |
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