/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612366.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612366.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 81711276 | 100.00 % | 40855638 | 100.00 % | 40855638 | 100.00 % |
| General Reads | 76296410 | 93.37 % | 38686693 | 94.69 % | 37609717 | 92.06 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 260 | 0.00 % | 132 | 0.00 % | 128 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5414606 | 6.63 % | 2168813 | 5.31 % | 3245793 | 7.94 % |
| Bisulfite_reads C2T | 38510755 | 47.13 % | 19489330 | 47.70 % | 19021425 | 46.56 % |
| Bisulfite_reads G2A | 37785915 | 46.24 % | 19197495 | 46.99 % | 18588420 | 45.50 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4871294 |
| Average Unique | 11.92 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3359818870 | 40.31 % | 1349180005 | 32.38 % | 2010638865 | 48.25 % |
| Base Counts Overall C | 822243427 | 9.87 % | 50762557 | 1.22 % | 771480870 | 18.51 % |
| Base Counts Overall G | 799802671 | 9.60 % | 766685485 | 18.40 % | 33117186 | 0.79 % |
| Base Counts Overall T | 3258147371 | 39.09 % | 1958287632 | 46.99 % | 1299859739 | 31.19 % |
| Base Counts Overall N | 94537813 | 1.13 % | 42359397 | 1.02 % | 52178416 | 1.25 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9958682293812274 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 8586377 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 40855638 |
| 101 | 40855638 |
Insert Size Plot
| Insert Size Histogram |
 |