/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612419.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612419.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 88389206 | 100.00 % | 44194603 | 100.00 % | 44194603 | 100.00 % |
| General Reads | 82337658 | 93.15 % | 42058586 | 95.17 % | 40279072 | 91.14 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 296 | 0.00 % | 151 | 0.00 % | 145 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6051252 | 6.85 % | 2135866 | 4.83 % | 3915386 | 8.86 % |
| Bisulfite_reads C2T | 41564982 | 47.02 % | 21191890 | 47.95 % | 20373092 | 46.10 % |
| Bisulfite_reads G2A | 40772972 | 46.13 % | 20866847 | 47.22 % | 19906125 | 45.04 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5286838 |
| Average Unique | 11.96 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3636396175 | 40.33 % | 1460599217 | 32.40 % | 2175796958 | 48.27 % |
| Base Counts Overall C | 888921516 | 9.86 % | 55043389 | 1.22 % | 833878127 | 18.50 % |
| Base Counts Overall G | 866475777 | 9.61 % | 829200581 | 18.39 % | 37275196 | 0.83 % |
| Base Counts Overall T | 3525207906 | 39.10 % | 2118033166 | 46.99 % | 1407174740 | 31.22 % |
| Base Counts Overall N | 98697638 | 1.09 % | 44973153 | 1.00 % | 53724485 | 1.19 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.994279504563298 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 9197147 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 101 | 44194603 |
| 101 | 44194603 |
Insert Size Plot
| Insert Size Histogram |
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