/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612433.41
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612433.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 159080376 | 100.00 % | 79540188 | 100.00 % | 79540188 | 100.00 % |
| General Reads | 156431573 | 98.33 % | 78701852 | 98.95 % | 77729721 | 97.72 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 285999 | 0.18 % | 144218 | 0.18 % | 141781 | 0.18 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2362804 | 1.49 % | 694118 | 0.87 % | 1668686 | 2.10 % |
| Bisulfite_reads C2T | 81065447 | 50.96 % | 40772045 | 51.26 % | 40293402 | 50.66 % |
| Bisulfite_reads G2A | 75652125 | 47.56 % | 38074025 | 47.87 % | 37578100 | 47.24 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 60073215 |
| Average Unique | 75.53 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 6177928881 | 38.07 % | 2419429344 | 29.82 % | 3758499537 | 46.33 % |
| Base Counts Overall C | 1874996596 | 11.56 % | 76309378 | 0.94 % | 1798687218 | 22.17 % |
| Base Counts Overall G | 1912764441 | 11.79 % | 1852194370 | 22.83 % | 60570071 | 0.75 % |
| Base Counts Overall T | 6088923650 | 37.53 % | 3685205147 | 45.42 % | 2403718503 | 29.63 % |
| Base Counts Overall N | 171584784 | 1.06 % | 79960937 | 0.99 % | 91623847 | 1.13 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9948573668844911 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 72287685 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 79540188 |
| 101 | 79540188 |
Insert Size Plot
| Insert Size Histogram |
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