/EXTERNAL DEEP/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs/41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612436.41

BACK

SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs LANE 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612436.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 89117426 100.00 % 44558713 100.00 % 44558713 100.00 %
General Reads 86294370 96.83 % 43213196 96.98 % 43081174 96.68 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5 0.00 % 1 0.00 % 4 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 2823051 3.17 % 1345516 3.02 % 1477535 3.32 %
Bisulfite_reads C2T 43961769 49.33 % 22012126 49.40 % 21949643 49.26 %
Bisulfite_reads G2A 42332606 47.50 % 21201071 47.58 % 21131535 47.42 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 32810563
Average Unique 73.63 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3081773408 36.93 % 1125401928 28.19 % 1956371480 44.93 %
Base Counts Overall C 1154416934 13.83 % 104007314 2.61 % 1050409620 24.12 %
Base Counts Overall G 1137651254 13.63 % 1019679874 25.55 % 117971380 2.71 %
Base Counts Overall T 2882124781 34.53 % 1697332876 42.52 % 1184791905 27.21 %
Base Counts Overall N 90007135 1.08 % 45082161 1.13 % 44924974 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 38929512



Mapping Quality

Mapping Quality Histogram
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612436.41.mapq.png



Read Length

Read Length Reads
70 132545
86 200887
73 153015
24 116153
20 110896
45 110518
97 11160902
89 1049046
52 113037
93 632687
77 140138
59 134567
79 127186
82 70500
31 105836
74 156497
80 120537
96 2789653
84 96761
39 106295
43 119614
63 114663
91 1183202
46 109044
40 108973
58 128654
30 103793
49 111859
38 108922
60 130696
57 120415
75 159199
53 111492
69 134574
90 2421625
88 559160
27 106606
36 108326
71 137201
32 104566
33 106681
81 101370
47 108074
54 115462
76 151277
41 111983
78 131257
51 113228
29 105226
44 117342
95 1248822
25 116399
85 132041
22 104654
72 128878
21 109815
56 116512
98 14162104
23 105053
65 119101
48 111593
61 122719
42 115320
35 105435
87 287131
92 337755
28 106211
34 103850
83 68107
94 827388
26 108803
55 113070
37 106920
67 129590
68 133989
50 113875
64 117161
66 118671
62 115606
70 62476
86 48398
73 32804
24 9389
20 8780
45 20443
97 3126354
89 97025
52 19696
93 220603
77 30823
59 23160
79 33122
82 35930
31 13089
74 31329
80 33528
96 2937150
84 39912
39 16651
43 17744
63 39608
91 140779
46 22099
40 17869
58 23080
30 12389
49 19639
38 15073
60 24190
57 22005
75 30107
53 19767
69 67666
90 154415
99 25919606
88 71511
27 10739
36 14490
71 46127
32 14106
33 14073
81 34699
47 21952
54 20635
76 30345
41 18761
78 32484
51 18891
29 11730
44 19300
95 1058780
25 9698
85 42313
22 8821
72 37285
21 8750
56 22084
98 8542602
23 8773
65 41040
48 21327
61 26180
42 16455
35 15060
87 55525
92 132881
28 11623
34 14259
83 38024
94 383305
26 10696
55 21047
37 14454
67 52543
68 62813
50 18959
64 40299
66 44162
62 32414



Insert Size Plot

Insert Size Histogram
41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612436.41.isize.png