Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs
============================================================================================================================================================

Mapping Stats (Reads)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |2052568976                                  |100.00 %                                    |1026284488                                  |100.00 %                                    |1026284488                                  |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |1958400625                                  |95.41 %                                     |986690669                                   |96.14 %                                     |971709956                                   |94.68 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1645664                                     |0.08 %                                      |829589                                      |0.08 %                                      |816075                                      |0.08 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |92522687                                    |4.51 %                                      |38764230                                    |3.78 %                                      |53758457                                    |5.24 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |999947696                                   |48.72 %                                     |503344620                                   |49.05 %                                     |496603076                                   |48.39 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |960098593                                   |46.78 %                                     |484175638                                   |47.18 %                                     |475922955                                   |46.37 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
----------------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |484151924                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |47.18 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |79367808569                                 |38.33 %                                     |31189087581                                 |30.29 %                                     |48178720988                                 |46.28 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |24246823521                                 |11.71 %                                     |1929395976                                  |1.87 %                                      |22317427545                                 |21.44 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |24376512834                                 |11.77 %                                     |22526479508                                 |21.87 %                                     |1850033326                                  |1.78 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |76861421006                                 |37.12 %                                     |46293018091                                 |44.95 %                                     |30568402915                                 |29.36 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |2231094912                                  |1.08 %                                      |1046319352                                  |1.02 %                                      |1184775560                                  |1.14 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
-------------------------

.. image:: K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs_mapq.png

Bisulfite Conversion Rate
-------------------------

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9365511569736714                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
---------------------

.. image:: K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs_isize.png

Correct Pairs
-------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |606836887                                  |
+--------------------------------------------+-------------------------------------------+

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612168.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |92954732                                    |100.00 %                                    |46477366                                    |100.00 %                                    |46477366                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |86924405                                    |93.51 %                                     |44102787                                    |94.89 %                                     |42821618                                    |92.13 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |299                                         |0.00 %                                      |150                                         |0.00 %                                      |149                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |6030028                                     |6.49 %                                      |2374429                                     |5.11 %                                      |3655599                                     |7.87 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |43894426                                    |47.22 %                                     |22228827                                    |47.83 %                                     |21665599                                    |46.62 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |43030278                                    |46.29 %                                     |21874110                                    |47.06 %                                     |21156168                                    |45.52 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |5667136                                    |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |12.19 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3817668276                                  |40.26 %                                     |1532454471                                  |32.33 %                                     |2285213805                                  |48.20 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |937682810                                   |9.89 %                                      |60266916                                    |1.27 %                                      |877415894                                   |18.51 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |919029486                                   |9.69 %                                      |878074657                                   |18.52 %                                     |40954829                                    |0.86 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3699969892                                  |39.02 %                                     |2222273270                                  |46.88 %                                     |1477696622                                  |31.17 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |107032200                                   |1.13 %                                      |47622018                                    |1.00 %                                      |59410182                                    |1.25 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9929571580097333                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |9950242                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612168.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |46477366                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |46477366                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612168.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612171.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |86503022                                    |100.00 %                                    |43251511                                    |100.00 %                                    |43251511                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |80917039                                    |93.54 %                                     |40982413                                    |94.75 %                                     |39934626                                    |92.33 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |249                                         |0.00 %                                      |124                                         |0.00 %                                      |125                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5585734                                     |6.46 %                                      |2268974                                     |5.25 %                                      |3316760                                     |7.67 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |40881793                                    |47.26 %                                     |20669288                                    |47.79 %                                     |20212505                                    |46.73 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |40035495                                    |46.28 %                                     |20313249                                    |46.97 %                                     |19722246                                    |45.60 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |5309495                                    |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |12.28 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3555034249                                  |40.29 %                                     |1439868720                                  |32.64 %                                     |2115165529                                  |47.94 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |874969074                                   |9.92 %                                      |65302229                                    |1.48 %                                      |809666845                                   |18.35 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |873192971                                   |9.90 %                                      |817765091                                   |18.54 %                                     |55427880                                    |1.26 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3422718385                                  |38.79 %                                     |2044848299                                  |46.35 %                                     |1377870086                                  |31.23 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |97393565                                    |1.10 %                                      |43869783                                    |0.99 %                                      |53523782                                    |1.21 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9964715037029087                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |9396673                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612171.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |43251511                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |43251511                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612171.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612177.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |158774804                                   |100.00 %                                    |79387402                                    |100.00 %                                    |79387402                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |156186792                                   |98.37 %                                     |78530786                                    |98.92 %                                     |77656006                                    |97.82 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |285877                                      |0.18 %                                      |144045                                      |0.18 %                                      |141832                                      |0.18 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2302135                                     |1.45 %                                      |712571                                      |0.90 %                                      |1589564                                     |2.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |80938603                                    |50.98 %                                     |40683911                                    |51.25 %                                     |40254692                                    |50.71 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |75534066                                    |47.57 %                                     |37990920                                    |47.86 %                                     |37543146                                    |47.29 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |60023555                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |75.61 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |6162300652                                  |38.05 %                                     |2413581832                                  |29.81 %                                     |3748718820                                  |46.29 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1877284285                                  |11.59 %                                     |76960787                                    |0.95 %                                      |1800323498                                  |22.23 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1907882145                                  |11.78 %                                     |1848650693                                  |22.83 %                                     |59231452                                    |0.73 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |6080592543                                  |37.55 %                                     |3678527887                                  |45.43 %                                     |2402064656                                  |29.66 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |166970383                                   |1.03 %                                      |79793805                                    |0.99 %                                      |87176578                                    |1.08 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9947636114741983                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |72218741                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612177.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |79387402                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |79387402                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612177.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612436.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |89117426                                    |100.00 %                                    |44558713                                    |100.00 %                                    |44558713                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |86294370                                    |96.83 %                                     |43213196                                    |96.98 %                                     |43081174                                    |96.68 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |5                                           |0.00 %                                      |1                                           |0.00 %                                      |4                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2823051                                     |3.17 %                                      |1345516                                     |3.02 %                                      |1477535                                     |3.32 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |43961769                                    |49.33 %                                     |22012126                                    |49.40 %                                     |21949643                                    |49.26 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |42332606                                    |47.50 %                                     |21201071                                    |47.58 %                                     |21131535                                    |47.42 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |32810563                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |73.63 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3081773408                                  |36.93 %                                     |1125401928                                  |28.19 %                                     |1956371480                                  |44.93 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1154416934                                  |13.83 %                                     |104007314                                   |2.61 %                                      |1050409620                                  |24.12 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1137651254                                  |13.63 %                                     |1019679874                                  |25.55 %                                     |117971380                                   |2.71 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2882124781                                  |34.53 %                                     |1697332876                                  |42.52 %                                     |1184791905                                  |27.21 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |90007135                                    |1.08 %                                      |45082161                                    |1.13 %                                      |44924974                                    |1.03 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |38929512                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612436.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|70                                          |132545                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |200887                                     |
+--------------------------------------------+-------------------------------------------+
|73                                          |153015                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |116153                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |110896                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |110518                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |11160902                                   |
+--------------------------------------------+-------------------------------------------+
|89                                          |1049046                                    |
+--------------------------------------------+-------------------------------------------+
|52                                          |113037                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |632687                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |140138                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |134567                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |127186                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |70500                                      |
+--------------------------------------------+-------------------------------------------+
|31                                          |105836                                     |
+--------------------------------------------+-------------------------------------------+
|74                                          |156497                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |120537                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |2789653                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |96761                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |106295                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |119614                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |114663                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |1183202                                    |
+--------------------------------------------+-------------------------------------------+
|46                                          |109044                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |108973                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |128654                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |103793                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |111859                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |108922                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |130696                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |120415                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |159199                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |111492                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |134574                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |2421625                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |559160                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |106606                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |108326                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |137201                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |104566                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |106681                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |101370                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |108074                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |115462                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |151277                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |111983                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |131257                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |113228                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |105226                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |117342                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |1248822                                    |
+--------------------------------------------+-------------------------------------------+
|25                                          |116399                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |132041                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |104654                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |128878                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |109815                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |116512                                     |
+--------------------------------------------+-------------------------------------------+
|98                                          |14162104                                   |
+--------------------------------------------+-------------------------------------------+
|23                                          |105053                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |119101                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |111593                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |122719                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |115320                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |105435                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |287131                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |337755                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |106211                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |103850                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |68107                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |827388                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |108803                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |113070                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |106920                                     |
+--------------------------------------------+-------------------------------------------+
|67                                          |129590                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |133989                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |113875                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |117161                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |118671                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |115606                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |62476                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |48398                                      |
+--------------------------------------------+-------------------------------------------+
|73                                          |32804                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |9389                                       |
+--------------------------------------------+-------------------------------------------+
|20                                          |8780                                       |
+--------------------------------------------+-------------------------------------------+
|45                                          |20443                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |3126354                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |97025                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |19696                                      |
+--------------------------------------------+-------------------------------------------+
|93                                          |220603                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |30823                                      |
+--------------------------------------------+-------------------------------------------+
|59                                          |23160                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |33122                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |35930                                      |
+--------------------------------------------+-------------------------------------------+
|31                                          |13089                                      |
+--------------------------------------------+-------------------------------------------+
|74                                          |31329                                      |
+--------------------------------------------+-------------------------------------------+
|80                                          |33528                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |2937150                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |39912                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |16651                                      |
+--------------------------------------------+-------------------------------------------+
|43                                          |17744                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |39608                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |140779                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |22099                                      |
+--------------------------------------------+-------------------------------------------+
|40                                          |17869                                      |
+--------------------------------------------+-------------------------------------------+
|58                                          |23080                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |12389                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |19639                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |15073                                      |
+--------------------------------------------+-------------------------------------------+
|60                                          |24190                                      |
+--------------------------------------------+-------------------------------------------+
|57                                          |22005                                      |
+--------------------------------------------+-------------------------------------------+
|75                                          |30107                                      |
+--------------------------------------------+-------------------------------------------+
|53                                          |19767                                      |
+--------------------------------------------+-------------------------------------------+
|69                                          |67666                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |154415                                     |
+--------------------------------------------+-------------------------------------------+
|99                                          |25919606                                   |
+--------------------------------------------+-------------------------------------------+
|88                                          |71511                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |10739                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |14490                                      |
+--------------------------------------------+-------------------------------------------+
|71                                          |46127                                      |
+--------------------------------------------+-------------------------------------------+
|32                                          |14106                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |14073                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |34699                                      |
+--------------------------------------------+-------------------------------------------+
|47                                          |21952                                      |
+--------------------------------------------+-------------------------------------------+
|54                                          |20635                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |30345                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |18761                                      |
+--------------------------------------------+-------------------------------------------+
|78                                          |32484                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |18891                                      |
+--------------------------------------------+-------------------------------------------+
|29                                          |11730                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |19300                                      |
+--------------------------------------------+-------------------------------------------+
|95                                          |1058780                                    |
+--------------------------------------------+-------------------------------------------+
|25                                          |9698                                       |
+--------------------------------------------+-------------------------------------------+
|85                                          |42313                                      |
+--------------------------------------------+-------------------------------------------+
|22                                          |8821                                       |
+--------------------------------------------+-------------------------------------------+
|72                                          |37285                                      |
+--------------------------------------------+-------------------------------------------+
|21                                          |8750                                       |
+--------------------------------------------+-------------------------------------------+
|56                                          |22084                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |8542602                                    |
+--------------------------------------------+-------------------------------------------+
|23                                          |8773                                       |
+--------------------------------------------+-------------------------------------------+
|65                                          |41040                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |21327                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |26180                                      |
+--------------------------------------------+-------------------------------------------+
|42                                          |16455                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |15060                                      |
+--------------------------------------------+-------------------------------------------+
|87                                          |55525                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |132881                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |11623                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |14259                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |38024                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |383305                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |10696                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |21047                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |14454                                      |
+--------------------------------------------+-------------------------------------------+
|67                                          |52543                                      |
+--------------------------------------------+-------------------------------------------+
|68                                          |62813                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |18959                                      |
+--------------------------------------------+-------------------------------------------+
|64                                          |40299                                      |
+--------------------------------------------+-------------------------------------------+
|66                                          |44162                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |32414                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612436.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612228.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |156557866                                   |100.00 %                                    |78278933                                    |100.00 %                                    |78278933                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |153896048                                   |98.30 %                                     |77425343                                    |98.91 %                                     |76470705                                    |97.69 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |282539                                      |0.18 %                                      |142457                                      |0.18 %                                      |140082                                      |0.18 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2379279                                     |1.52 %                                      |711133                                      |0.91 %                                      |1668146                                     |2.13 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |79787715                                    |50.96 %                                     |40129653                                    |51.26 %                                     |39658062                                    |50.66 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |74390872                                    |47.52 %                                     |37438147                                    |47.83 %                                     |36952725                                    |47.21 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |58999332                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |75.37 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |6075879968                                  |38.05 %                                     |2380540323                                  |29.81 %                                     |3695339645                                  |46.28 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1852309728                                  |11.60 %                                     |76147170                                    |0.95 %                                      |1776162558                                  |22.25 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1887283170                                  |11.82 %                                     |1827206854                                  |22.88 %                                     |60076316                                    |0.75 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |5987855771                                  |37.50 %                                     |3622026663                                  |45.36 %                                     |2365829108                                  |29.63 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |165573695                                   |1.04 %                                      |78530156                                    |0.98 %                                      |87043539                                    |1.09 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9947715347452283                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |71087241                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612228.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |78278933                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |78278933                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612228.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612187.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |91356828                                    |100.00 %                                    |45678414                                    |100.00 %                                    |45678414                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |88545616                                    |96.92 %                                     |44341331                                    |97.07 %                                     |44204285                                    |96.77 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |3                                           |0.00 %                                      |1                                           |0.00 %                                      |2                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2811209                                     |3.08 %                                      |1337082                                     |2.93 %                                      |1474127                                     |3.23 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |45100400                                    |49.37 %                                     |22583149                                    |49.44 %                                     |22517251                                    |49.30 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |43445219                                    |47.56 %                                     |21758183                                    |47.63 %                                     |21687036                                    |47.48 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |33750249                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |73.89 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3166725476                                  |37.05 %                                     |1155994342                                  |28.31 %                                     |2010731134                                  |45.05 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1174754278                                  |13.74 %                                     |104687245                                   |2.56 %                                      |1070067033                                  |23.97 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1155769255                                  |13.52 %                                     |1037657035                                  |25.41 %                                     |118112220                                   |2.65 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2958284264                                  |34.61 %                                     |1739599689                                  |42.60 %                                     |1218684575                                  |27.30 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |91706192                                    |1.07 %                                      |45683263                                    |1.12 %                                      |46022929                                    |1.03 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |40016224                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612187.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|70                                          |137322                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |209758                                     |
+--------------------------------------------+-------------------------------------------+
|73                                          |161365                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |122539                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |115322                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |115361                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |11442241                                   |
+--------------------------------------------+-------------------------------------------+
|89                                          |1087128                                    |
+--------------------------------------------+-------------------------------------------+
|52                                          |117466                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |654944                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |144379                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |140285                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |131092                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |74776                                      |
+--------------------------------------------+-------------------------------------------+
|31                                          |111450                                     |
+--------------------------------------------+-------------------------------------------+
|74                                          |160829                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |125940                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |2840545                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |102345                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |112585                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |124618                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |119720                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |1213840                                    |
+--------------------------------------------+-------------------------------------------+
|46                                          |113961                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |115383                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |132942                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |108888                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |116468                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |114438                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |135765                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |125022                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |163693                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |117051                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |139648                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |2499689                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |583511                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |112477                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |113312                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |142480                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |110438                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |113456                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |106515                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |113247                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |119965                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |157422                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |116311                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |135713                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |118656                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |110458                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |121908                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |1295998                                    |
+--------------------------------------------+-------------------------------------------+
|25                                          |123545                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |139045                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |110748                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |135054                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |114740                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |121185                                     |
+--------------------------------------------+-------------------------------------------+
|98                                          |14290375                                   |
+--------------------------------------------+-------------------------------------------+
|23                                          |110309                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |124703                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |116101                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |127740                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |119929                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |111038                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |302050                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |350971                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |112260                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |109927                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |72514                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |856358                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |114657                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |118166                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |112522                                     |
+--------------------------------------------+-------------------------------------------+
|67                                          |136074                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |140340                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |119146                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |122008                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |125261                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |120983                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |58281                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |50806                                      |
+--------------------------------------------+-------------------------------------------+
|73                                          |33858                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |9496                                       |
+--------------------------------------------+-------------------------------------------+
|20                                          |9086                                       |
+--------------------------------------------+-------------------------------------------+
|45                                          |20968                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |3240361                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |100104                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |20473                                      |
+--------------------------------------------+-------------------------------------------+
|93                                          |232410                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |32273                                      |
+--------------------------------------------+-------------------------------------------+
|59                                          |23921                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |34229                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |37126                                      |
+--------------------------------------------+-------------------------------------------+
|31                                          |13238                                      |
+--------------------------------------------+-------------------------------------------+
|74                                          |32477                                      |
+--------------------------------------------+-------------------------------------------+
|80                                          |34970                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |3022868                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |42059                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |17278                                      |
+--------------------------------------------+-------------------------------------------+
|43                                          |18484                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |40507                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |145974                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |22500                                      |
+--------------------------------------------+-------------------------------------------+
|40                                          |18506                                      |
+--------------------------------------------+-------------------------------------------+
|58                                          |23770                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |12334                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |20030                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |15451                                      |
+--------------------------------------------+-------------------------------------------+
|60                                          |24340                                      |
+--------------------------------------------+-------------------------------------------+
|57                                          |23083                                      |
+--------------------------------------------+-------------------------------------------+
|75                                          |31353                                      |
+--------------------------------------------+-------------------------------------------+
|53                                          |20259                                      |
+--------------------------------------------+-------------------------------------------+
|69                                          |68295                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |158649                                     |
+--------------------------------------------+-------------------------------------------+
|99                                          |26536336                                   |
+--------------------------------------------+-------------------------------------------+
|88                                          |75137                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |11101                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |14624                                      |
+--------------------------------------------+-------------------------------------------+
|71                                          |47004                                      |
+--------------------------------------------+-------------------------------------------+
|32                                          |14270                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |14142                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |36325                                      |
+--------------------------------------------+-------------------------------------------+
|47                                          |22200                                      |
+--------------------------------------------+-------------------------------------------+
|54                                          |21060                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |31809                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |19938                                      |
+--------------------------------------------+-------------------------------------------+
|78                                          |33502                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |19664                                      |
+--------------------------------------------+-------------------------------------------+
|29                                          |11699                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |19683                                      |
+--------------------------------------------+-------------------------------------------+
|95                                          |1102590                                    |
+--------------------------------------------+-------------------------------------------+
|25                                          |10098                                      |
+--------------------------------------------+-------------------------------------------+
|85                                          |45565                                      |
+--------------------------------------------+-------------------------------------------+
|22                                          |9093                                       |
+--------------------------------------------+-------------------------------------------+
|72                                          |38634                                      |
+--------------------------------------------+-------------------------------------------+
|21                                          |8874                                       |
+--------------------------------------------+-------------------------------------------+
|56                                          |22649                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |8702643                                    |
+--------------------------------------------+-------------------------------------------+
|23                                          |8894                                       |
+--------------------------------------------+-------------------------------------------+
|65                                          |41948                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |21540                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |27027                                      |
+--------------------------------------------+-------------------------------------------+
|42                                          |18123                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |15293                                      |
+--------------------------------------------+-------------------------------------------+
|87                                          |58475                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |139503                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |12075                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |14774                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |39251                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |398993                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |10987                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |21827                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |14861                                      |
+--------------------------------------------+-------------------------------------------+
|67                                          |51442                                      |
+--------------------------------------------+-------------------------------------------+
|68                                          |66132                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |19638                                      |
+--------------------------------------------+-------------------------------------------+
|64                                          |40847                                      |
+--------------------------------------------+-------------------------------------------+
|66                                          |44959                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |33368                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612187.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612318.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |83714026                                    |100.00 %                                    |41857013                                    |100.00 %                                    |41857013                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |77600212                                    |92.70 %                                     |39149623                                    |93.53 %                                     |38450589                                    |91.86 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |249                                         |0.00 %                                      |126                                         |0.00 %                                      |123                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |6113565                                     |7.30 %                                      |2707264                                     |6.47 %                                      |3406301                                     |8.14 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |39207823                                    |46.84 %                                     |19746033                                    |47.17 %                                     |19461790                                    |46.50 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |38392638                                    |45.86 %                                     |19403716                                    |46.36 %                                     |18988922                                    |45.37 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |5118543                                    |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |12.23 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3436657269                                  |40.25 %                                     |1391092826                                  |32.58 %                                     |2045564443                                  |47.91 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |850147347                                   |9.96 %                                      |64421091                                    |1.51 %                                      |785726256                                   |18.40 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |840666702                                   |9.85 %                                      |785891795                                   |18.41 %                                     |54774907                                    |1.28 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3319465906                                  |38.87 %                                     |1985863272                                  |46.51 %                                     |1333602634                                  |31.24 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |91893428                                    |1.08 %                                      |42146342                                    |0.99 %                                      |49747086                                    |1.17 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9952876622667055                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |9056935                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612318.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |41857013                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |41857013                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612318.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612405.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |95538942                                    |100.00 %                                    |47769471                                    |100.00 %                                    |47769471                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |87242095                                    |91.32 %                                     |43848986                                    |91.79 %                                     |43393109                                    |90.84 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |474                                         |0.00 %                                      |245                                         |0.00 %                                      |229                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |8296373                                     |8.68 %                                      |3920240                                     |8.21 %                                      |4376133                                     |9.16 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |44020542                                    |46.08 %                                     |22085016                                    |46.23 %                                     |21935526                                    |45.92 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |43222027                                    |45.24 %                                     |21764215                                    |45.56 %                                     |21457812                                    |44.92 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |5618935                                    |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |11.76 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3914969647                                  |40.17 %                                     |1575438593                                  |32.33 %                                     |2339531054                                  |48.02 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |980293579                                   |10.06 %                                     |68280331                                    |1.40 %                                      |912013248                                   |18.72 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |930701173                                   |9.55 %                                      |886721545                                   |18.20 %                                     |43979628                                    |0.90 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3806035945                                  |39.06 %                                     |2292298575                                  |47.05 %                                     |1513737370                                  |31.07 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |112971740                                   |1.16 %                                      |49746998                                    |1.02 %                                      |63224742                                    |1.30 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.7279221710105036                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |9626762                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612405.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |47769471                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |47769471                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612405.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612156.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |90768494                                    |100.00 %                                    |45384247                                    |100.00 %                                    |45384247                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |87899373                                    |96.84 %                                     |44006169                                    |96.96 %                                     |43893204                                    |96.71 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2                                           |0.00 %                                      |1                                           |0.00 %                                      |1                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2869119                                     |3.16 %                                      |1378077                                     |3.04 %                                      |1491042                                     |3.29 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |44786867                                    |49.34 %                                     |22420502                                    |49.40 %                                     |22366365                                    |49.28 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |43112508                                    |47.50 %                                     |21585668                                    |47.56 %                                     |21526840                                    |47.43 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |33439081                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |73.68 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3140884136                                  |36.97 %                                     |1147018547                                  |28.24 %                                     |1993865589                                  |44.97 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1172834370                                  |13.81 %                                     |105746645                                   |2.60 %                                      |1067087725                                  |24.07 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1157459699                                  |13.62 %                                     |1036010432                                  |25.51 %                                     |121449267                                   |2.74 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2932869676                                  |34.52 %                                     |1727371351                                  |42.53 %                                     |1205498325                                  |27.19 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |91124728                                    |1.07 %                                      |45390178                                    |1.12 %                                      |45734550                                    |1.03 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |39660955                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612156.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|70                                          |136117                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |206398                                     |
+--------------------------------------------+-------------------------------------------+
|73                                          |159049                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |120215                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |112887                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |112898                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |11390036                                   |
+--------------------------------------------+-------------------------------------------+
|89                                          |1081343                                    |
+--------------------------------------------+-------------------------------------------+
|52                                          |114997                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |648869                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |139651                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |137602                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |129271                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |73993                                      |
+--------------------------------------------+-------------------------------------------+
|31                                          |109121                                     |
+--------------------------------------------+-------------------------------------------+
|74                                          |167455                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |124035                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |2845493                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |100741                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |110240                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |121757                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |117090                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |1202766                                    |
+--------------------------------------------+-------------------------------------------+
|46                                          |112072                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |113083                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |131427                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |106592                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |115379                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |112720                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |133621                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |122966                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |162388                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |114821                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |138973                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |2469155                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |574859                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |110027                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |110860                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |142296                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |108836                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |110562                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |104482                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |111487                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |118563                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |154925                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |114128                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |135080                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |116177                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |108221                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |118853                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |1277083                                    |
+--------------------------------------------+-------------------------------------------+
|25                                          |120385                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |136912                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |107978                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |134112                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |112884                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |118808                                     |
+--------------------------------------------+-------------------------------------------+
|98                                          |14277639                                   |
+--------------------------------------------+-------------------------------------------+
|23                                          |108750                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |121869                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |113650                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |125904                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |117930                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |108932                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |295372                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |348495                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |110248                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |107584                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |70388                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |844688                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |112832                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |116101                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |110495                                     |
+--------------------------------------------+-------------------------------------------+
|67                                          |135501                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |138041                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |116364                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |119656                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |122466                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |118603                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |61358                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |50333                                      |
+--------------------------------------------+-------------------------------------------+
|73                                          |33222                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |9552                                       |
+--------------------------------------------+-------------------------------------------+
|20                                          |9278                                       |
+--------------------------------------------+-------------------------------------------+
|45                                          |20983                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |3194077                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |101047                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |20389                                      |
+--------------------------------------------+-------------------------------------------+
|93                                          |229526                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |32543                                      |
+--------------------------------------------+-------------------------------------------+
|59                                          |23951                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |34330                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |37243                                      |
+--------------------------------------------+-------------------------------------------+
|31                                          |14272                                      |
+--------------------------------------------+-------------------------------------------+
|74                                          |32342                                      |
+--------------------------------------------+-------------------------------------------+
|80                                          |34905                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |3006311                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |42140                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |16939                                      |
+--------------------------------------------+-------------------------------------------+
|43                                          |18316                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |40707                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |145735                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |22943                                      |
+--------------------------------------------+-------------------------------------------+
|40                                          |18667                                      |
+--------------------------------------------+-------------------------------------------+
|58                                          |23854                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |13128                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |20435                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |15393                                      |
+--------------------------------------------+-------------------------------------------+
|60                                          |24477                                      |
+--------------------------------------------+-------------------------------------------+
|57                                          |22868                                      |
+--------------------------------------------+-------------------------------------------+
|75                                          |31876                                      |
+--------------------------------------------+-------------------------------------------+
|53                                          |20460                                      |
+--------------------------------------------+-------------------------------------------+
|69                                          |67919                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |159002                                     |
+--------------------------------------------+-------------------------------------------+
|99                                          |26322289                                   |
+--------------------------------------------+-------------------------------------------+
|88                                          |74115                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |11524                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |14655                                      |
+--------------------------------------------+-------------------------------------------+
|71                                          |46998                                      |
+--------------------------------------------+-------------------------------------------+
|32                                          |14787                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |14908                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |35926                                      |
+--------------------------------------------+-------------------------------------------+
|47                                          |22969                                      |
+--------------------------------------------+-------------------------------------------+
|54                                          |21163                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |31790                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |19513                                      |
+--------------------------------------------+-------------------------------------------+
|78                                          |33559                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |19320                                      |
+--------------------------------------------+-------------------------------------------+
|29                                          |12397                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |19994                                      |
+--------------------------------------------+-------------------------------------------+
|95                                          |1095369                                    |
+--------------------------------------------+-------------------------------------------+
|25                                          |10298                                      |
+--------------------------------------------+-------------------------------------------+
|85                                          |45687                                      |
+--------------------------------------------+-------------------------------------------+
|22                                          |9390                                       |
+--------------------------------------------+-------------------------------------------+
|72                                          |37950                                      |
+--------------------------------------------+-------------------------------------------+
|21                                          |9161                                       |
+--------------------------------------------+-------------------------------------------+
|56                                          |23194                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |8687512                                    |
+--------------------------------------------+-------------------------------------------+
|23                                          |9139                                       |
+--------------------------------------------+-------------------------------------------+
|65                                          |42440                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |22405                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |27502                                      |
+--------------------------------------------+-------------------------------------------+
|42                                          |16906                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |15459                                      |
+--------------------------------------------+-------------------------------------------+
|87                                          |57513                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |138434                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |12513                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |15015                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |39186                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |391827                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |11109                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |21827                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |14962                                      |
+--------------------------------------------+-------------------------------------------+
|67                                          |54928                                      |
+--------------------------------------------+-------------------------------------------+
|68                                          |65253                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |19611                                      |
+--------------------------------------------+-------------------------------------------+
|64                                          |42680                                      |
+--------------------------------------------+-------------------------------------------+
|66                                          |46091                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |34458                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612156.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612366.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |81711276                                    |100.00 %                                    |40855638                                    |100.00 %                                    |40855638                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |76296410                                    |93.37 %                                     |38686693                                    |94.69 %                                     |37609717                                    |92.06 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |260                                         |0.00 %                                      |132                                         |0.00 %                                      |128                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5414606                                     |6.63 %                                      |2168813                                     |5.31 %                                      |3245793                                     |7.94 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |38510755                                    |47.13 %                                     |19489330                                    |47.70 %                                     |19021425                                    |46.56 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |37785915                                    |46.24 %                                     |19197495                                    |46.99 %                                     |18588420                                    |45.50 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |4871294                                    |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |11.92 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3359818870                                  |40.31 %                                     |1349180005                                  |32.38 %                                     |2010638865                                  |48.25 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |822243427                                   |9.87 %                                      |50762557                                    |1.22 %                                      |771480870                                   |18.51 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |799802671                                   |9.60 %                                      |766685485                                   |18.40 %                                     |33117186                                    |0.79 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3258147371                                  |39.09 %                                     |1958287632                                  |46.99 %                                     |1299859739                                  |31.19 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |94537813                                    |1.13 %                                      |42359397                                    |1.02 %                                      |52178416                                    |1.25 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9958682293812274                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |8586377                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612366.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |40855638                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |40855638                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612366.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612433.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |159080376                                   |100.00 %                                    |79540188                                    |100.00 %                                    |79540188                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |156431573                                   |98.33 %                                     |78701852                                    |98.95 %                                     |77729721                                    |97.72 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |285999                                      |0.18 %                                      |144218                                      |0.18 %                                      |141781                                      |0.18 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2362804                                     |1.49 %                                      |694118                                      |0.87 %                                      |1668686                                     |2.10 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |81065447                                    |50.96 %                                     |40772045                                    |51.26 %                                     |40293402                                    |50.66 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |75652125                                    |47.56 %                                     |38074025                                    |47.87 %                                     |37578100                                    |47.24 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |60073215                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |75.53 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |6177928881                                  |38.07 %                                     |2419429344                                  |29.82 %                                     |3758499537                                  |46.33 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1874996596                                  |11.56 %                                     |76309378                                    |0.94 %                                      |1798687218                                  |22.17 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1912764441                                  |11.79 %                                     |1852194370                                  |22.83 %                                     |60570071                                    |0.75 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |6088923650                                  |37.53 %                                     |3685205147                                  |45.42 %                                     |2403718503                                  |29.63 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |171584784                                   |1.06 %                                      |79960937                                    |0.99 %                                      |91623847                                    |1.13 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9948573668844911                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |72287685                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612433.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |79540188                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |79540188                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612433.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612423.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |157061824                                   |100.00 %                                    |78530912                                    |100.00 %                                    |78530912                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |154427679                                   |98.32 %                                     |77661003                                    |98.89 %                                     |76766676                                    |97.75 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |282364                                      |0.18 %                                      |142298                                      |0.18 %                                      |140066                                      |0.18 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2351781                                     |1.50 %                                      |727611                                      |0.93 %                                      |1624170                                     |2.07 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |80030967                                    |50.96 %                                     |40237152                                    |51.24 %                                     |39793815                                    |50.67 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |74679076                                    |47.55 %                                     |37566149                                    |47.84 %                                     |37112927                                    |47.26 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |59256912                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |75.46 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |6093351679                                  |38.04 %                                     |2385176377                                  |29.78 %                                     |3708175302                                  |46.29 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1857111997                                  |11.59 %                                     |77093427                                    |0.96 %                                      |1780018570                                  |22.22 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1889404318                                  |11.79 %                                     |1832645113                                  |22.88 %                                     |56759205                                    |0.71 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |6014232533                                  |37.54 %                                     |3636538397                                  |45.40 %                                     |2377694136                                  |29.68 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |166205521                                   |1.04 %                                      |78699710                                    |0.98 %                                      |87505811                                    |1.09 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9946982126362587                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |71346280                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612423.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |78530912                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |78530912                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612423.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612327.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |316140030                                   |100.00 %                                    |158070015                                   |100.00 %                                    |158070015                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |300990138                                   |95.21 %                                     |151117873                                   |95.60 %                                     |149872265                                   |94.81 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |505735                                      |0.16 %                                      |254965                                      |0.16 %                                      |250770                                      |0.16 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |14644157                                    |4.63 %                                      |6697177                                     |4.24 %                                      |7946980                                     |5.03 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |153592638                                   |48.58 %                                     |77090936                                    |48.77 %                                     |76501702                                    |48.40 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |147903235                                   |46.78 %                                     |74281902                                    |46.99 %                                     |73621333                                    |46.58 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |95426384                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |60.37 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |11271077599                                 |34.95 %                                     |4398025197                                  |27.28 %                                     |6873052402                                  |42.63 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |4797731290                                  |14.88 %                                     |715466974                                   |4.44 %                                      |4082264316                                  |25.32 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |5069021850                                  |15.72 %                                     |4225462068                                  |26.21 %                                     |843559782                                   |5.23 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |10786818995                                 |33.45 %                                     |6624750394                                  |41.09 %                                     |4162068601                                  |25.81 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |321633326                                   |1.00 %                                      |159436897                                   |0.99 %                                      |162196429                                   |1.01 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.7870456609742862                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |113293405                                  |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612327.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |158070015                                  |
+--------------------------------------------+-------------------------------------------+
|101                                         |158070015                                  |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612327.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612388.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |98901854                                    |100.00 %                                    |49450927                                    |100.00 %                                    |49450927                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |91574691                                    |92.59 %                                     |46203700                                    |93.43 %                                     |45370991                                    |91.75 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |340                                         |0.00 %                                      |171                                         |0.00 %                                      |169                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |7326823                                     |7.41 %                                      |3247056                                     |6.57 %                                      |4079767                                     |8.25 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |46260464                                    |46.77 %                                     |23296346                                    |47.11 %                                     |22964118                                    |46.44 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |45314567                                    |45.82 %                                     |22907525                                    |46.32 %                                     |22407042                                    |45.31 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |5937121                                    |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |12.01 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |4063554732                                  |40.28 %                                     |1630622802                                  |32.33 %                                     |2432931930                                  |48.23 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |999510836                                   |9.91 %                                      |65927417                                    |1.31 %                                      |933583419                                   |18.51 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |974005879                                   |9.66 %                                      |929161459                                   |18.42 %                                     |44844420                                    |0.89 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3939556323                                  |39.05 %                                     |2367685115                                  |46.94 %                                     |1571871208                                  |31.16 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |111361338                                   |1.10 %                                      |50597761                                    |1.00 %                                      |60763577                                    |1.20 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9942109391719347                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |10564788                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612388.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |49450927                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |49450927                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612388.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612390.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |101158616                                   |100.00 %                                    |50579308                                    |100.00 %                                    |50579308                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |93755515                                    |92.68 %                                     |47553410                                    |94.02 %                                     |46202105                                    |91.35 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |511                                         |0.00 %                                      |267                                         |0.00 %                                      |244                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |7402590                                     |7.32 %                                      |3025631                                     |5.98 %                                      |4376959                                     |8.65 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |47333815                                    |46.79 %                                     |23965018                                    |47.38 %                                     |23368797                                    |46.20 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |46422211                                    |45.89 %                                     |23588659                                    |46.64 %                                     |22833552                                    |45.14 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |6218569                                    |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |12.29 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |4128279333                                  |40.01 %                                     |1660306174                                  |32.18 %                                     |2467973159                                  |47.84 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1048849522                                  |10.17 %                                     |80094907                                    |1.55 %                                      |968754615                                   |18.78 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1012211072                                  |9.81 %                                      |962885707                                   |18.66 %                                     |49325365                                    |0.96 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4004464701                                  |38.81 %                                     |2400923507                                  |46.54 %                                     |1603541194                                  |31.08 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |124374204                                   |1.21 %                                      |54879121                                    |1.06 %                                      |69495083                                    |1.35 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.6889502436431866                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |10687219                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612390.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |50579308                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |50579308                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612390.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612419.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |88389206                                    |100.00 %                                    |44194603                                    |100.00 %                                    |44194603                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |82337658                                    |93.15 %                                     |42058586                                    |95.17 %                                     |40279072                                    |91.14 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |296                                         |0.00 %                                      |151                                         |0.00 %                                      |145                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |6051252                                     |6.85 %                                      |2135866                                     |4.83 %                                      |3915386                                     |8.86 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |41564982                                    |47.02 %                                     |21191890                                    |47.95 %                                     |20373092                                    |46.10 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |40772972                                    |46.13 %                                     |20866847                                    |47.22 %                                     |19906125                                    |45.04 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |5286838                                    |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |11.96 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3636396175                                  |40.33 %                                     |1460599217                                  |32.40 %                                     |2175796958                                  |48.27 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |888921516                                   |9.86 %                                      |55043389                                    |1.22 %                                      |833878127                                   |18.50 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |866475777                                   |9.61 %                                      |829200581                                   |18.39 %                                     |37275196                                    |0.83 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3525207906                                  |39.10 %                                     |2118033166                                  |46.99 %                                     |1407174740                                  |31.22 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |98697638                                    |1.09 %                                      |44973153                                    |1.00 %                                      |53724485                                    |1.19 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.994279504563298                          |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |9197147                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612419.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |44194603                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |44194603                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612419.41_isize.png

Sample K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs Lane 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612141.41
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |104839654                                   |100.00 %                                    |52419827                                    |100.00 %                                    |52419827                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |97081011                                    |92.60 %                                     |49106918                                    |93.68 %                                     |47974093                                    |91.52 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |462                                         |0.00 %                                      |237                                         |0.00 %                                      |225                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |7758181                                     |7.40 %                                      |3312672                                     |6.32 %                                      |4445509                                     |8.48 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |49008690                                    |46.75 %                                     |24743398                                    |47.20 %                                     |24265292                                    |46.29 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |48072783                                    |45.85 %                                     |24363757                                    |46.48 %                                     |23709026                                    |45.23 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |6344702                                    |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |12.10 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |4285508219                                  |40.08 %                                     |1724356883                                  |32.25 %                                     |2561151336                                  |47.90 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1082765932                                  |10.13 %                                     |82878199                                    |1.55 %                                      |999887733                                   |18.70 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1043190971                                  |9.76 %                                      |990586749                                   |18.53 %                                     |52604222                                    |0.98 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4154152364                                  |38.85 %                                     |2491452851                                  |46.60 %                                     |1662699513                                  |31.10 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |128027222                                   |1.20 %                                      |57547672                                    |1.08 %                                      |70479550                                    |1.32 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.674755731640763                          |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |10930701                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612141.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |52419827                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |52419827                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm16.Bisulfite-Seq.DNA_methylation.EGAX00001612141.41_isize.png

