/EXTERNAL DEEP/mapping_coverage/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1872033448 |
100% |
181407490738 |
100% |
| Mapped |
1825916443 |
97.54 % |
176763624701 |
97.44 % |
| Passed |
800822667 |
42.78 % |
74053981780 |
40.82 % |
| NotPassed |
1025093776 |
54.76 % |
102709642921 |
56.62 % |
| |
|
|
|
|
| LowMAPQ |
331398388 |
17.70 % |
32914009664 |
18.14 % |
| MateUnmapped |
46117005 |
2.46 % |
4635243523 |
2.56 % |
| Duplicate |
86997378 |
4.65 % |
8576370854 |
4.73 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
664764 |
0.04 % |
67110404 |
0.04 % |
| |
|
|
|
|
| NotCorrectlyAligned |
606033246 |
32.37 % |
61152151999 |
33.71 % |
| Unmapped |
46117005 |
2.46 % |
4643866037 |
2.56 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79763305039 |
100% |
| Passed |
69469845182 |
87.09 % |
| Trimmed |
3681419760 |
4.62 % |
| Clipped |
608988527 |
0.76 % |
| Overlapping |
5100334732 |
6.39 % |
| LowQuality |
902716838 |
1.13 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |