/EXTERNAL DEEP/methylation/K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs
BACK
SAMPLE K009049_K009050_K009051_K009052_K009053_K009054_K009055_K009056_K009057_K009058_K009059_K009060_K009061_K009062_K009063_K009064_K009065_17_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25778307 |
18297381 |
70.98 % |
| NonRefCpG |
330688 |
137341 |
41.53 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7966429 |
15.81 % |
5555776 |
13.32 % |
155612 |
25.65 % |
50017 |
13.57 % |
| Intermediate (0.3-0.7) |
12239000 |
24.29 % |
9249074 |
22.17 % |
169604 |
27.96 % |
95936 |
26.03 % |
| Methylated (0.7-1) |
30191195 |
59.91 % |
26918331 |
64.52 % |
281483 |
46.40 % |
222644 |
60.40 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.780 |
|
0.800 |
|
0.660 |
|
0.780 |
|