/REMC/mapping_coverage/A27342_5_lane_gembs
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SAMPLE A27342_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1653761878 |
100% |
145050481309 |
100% |
| Mapped |
1605575900 |
97.09 % |
140231883509 |
96.68 % |
| Passed |
875014861 |
52.91 % |
67175779609 |
46.31 % |
| NotPassed |
730561039 |
44.18 % |
73056103900 |
50.37 % |
| |
|
|
|
|
| LowMAPQ |
625858310 |
37.84 % |
62585831000 |
43.15 % |
| MateUnmapped |
48185978 |
2.91 % |
4818597800 |
3.32 % |
| Duplicate |
4250294 |
0.26 % |
425029400 |
0.29 % |
| BadOrientation |
248 |
0.00 % |
24800 |
0.00 % |
| LargeInsertSize |
69042 |
0.00 % |
6904200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
100383145 |
6.07 % |
10038314500 |
6.92 % |
| Unmapped |
48185978 |
2.91 % |
4818597800 |
3.32 % |
Base Level Counts
| Bases |
# |
% |
| Total |
87484788100 |
100% |
| Passed |
62214515593 |
71.11 % |
| Trimmed |
3606251072 |
4.12 % |
| Clipped |
1101672113 |
1.26 % |
| Overlapping |
19207336378 |
21.96 % |
| LowQuality |
1355012944 |
1.55 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |