/CEMT/mapping_coverage/A75621_1_lane_gembs
BACK
SAMPLE A75621_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
913863123 |
100% |
122460300149 |
100% |
| Mapped |
904803296 |
99.01 % |
121101326099 |
98.89 % |
| Passed |
705158504 |
77.16 % |
91154607299 |
74.44 % |
| NotPassed |
199644792 |
21.85 % |
29946718800 |
24.45 % |
| |
|
|
|
|
| LowMAPQ |
98932958 |
10.83 % |
14839943700 |
12.12 % |
| MateUnmapped |
9059827 |
0.99 % |
1358974050 |
1.11 % |
| Duplicate |
87268043 |
9.55 % |
13090206450 |
10.69 % |
| BadOrientation |
60 |
0.00 % |
9000 |
0.00 % |
| LargeInsertSize |
10916 |
0.00 % |
1637400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13432815 |
1.47 % |
2014922250 |
1.65 % |
| Unmapped |
9059827 |
0.99 % |
1358974050 |
1.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
105760678350 |
100% |
| Passed |
84123280619 |
79.54 % |
| Trimmed |
3046837540 |
2.88 % |
| Clipped |
355727665 |
0.34 % |
| Overlapping |
14250343386 |
13.47 % |
| LowQuality |
3984489140 |
3.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |