/CEMT/methylation/A75621_1_lane_gembs

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SAMPLE A75621_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27102327 20019556 73.87 %
NonRefCpG 284444 175147 61.58 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A75621_1_lane_gembs_coverage_refCpG.png ./IMG//A75621_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A75621_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A75621_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A75621_1_lane_gembs_quality_refcpg.png ./IMG//A75621_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A75621_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6307726 11.86 % 3250025 7.44 % 77279 14.34 % 29129 7.34 %
Intermediate (0.3-0.7) 12620453 23.73 % 9328507 21.34 % 135356 25.12 % 87548 22.08 %
Methylated (0.7-1) 34244669 64.40 % 31125822 71.22 % 326212 60.54 % 279915 70.58 %
Median Methylation 0.800 0.830 0.780 0.830