/CEMT/mapping_coverage/A91240_2_lane_gembs
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SAMPLE A91240_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1614875088 |
100% |
210760510220 |
100% |
| Mapped |
1599914308 |
99.07 % |
208516393220 |
98.94 % |
| Passed |
1332725213 |
82.53 % |
168438028970 |
79.92 % |
| NotPassed |
267189095 |
16.55 % |
40078364250 |
19.02 % |
| |
|
|
|
|
| LowMAPQ |
184495278 |
11.42 % |
27674291700 |
13.13 % |
| MateUnmapped |
14960780 |
0.93 % |
2244117000 |
1.06 % |
| Duplicate |
61845933 |
3.83 % |
9276889950 |
4.40 % |
| BadOrientation |
104 |
0.00 % |
15600 |
0.00 % |
| LargeInsertSize |
23702 |
0.00 % |
3555300 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20824078 |
1.29 % |
3123611700 |
1.48 % |
| Unmapped |
14960780 |
0.93 % |
2244117000 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
199895973150 |
100% |
| Passed |
157235068072 |
78.66 % |
| Trimmed |
5844011664 |
2.92 % |
| Clipped |
375346539 |
0.19 % |
| Overlapping |
31082597641 |
15.55 % |
| LowQuality |
5358949234 |
2.68 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |