/CEMT/methylation/A91240_2_lane_gembs

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SAMPLE A91240_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27349794 25434308 93.00 %
NonRefCpG 265726 218141 82.09 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A91240_2_lane_gembs_coverage_refCpG.png ./IMG//A91240_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A91240_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A91240_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A91240_2_lane_gembs_quality_refcpg.png ./IMG//A91240_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A91240_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4763121 8.78 % 3790720 7.32 % 29622 5.84 % 13011 2.93 %
Intermediate (0.3-0.7) 4357974 8.04 % 3795970 7.33 % 47194 9.30 % 28534 6.42 %
Methylated (0.7-1) 45104836 83.18 % 44190028 85.35 % 430641 84.86 % 402841 90.65 %
Median Methylation 0.920 0.920 0.920 0.930