/REMC/A27341_5_lane_gembs

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SAMPLE A27341_5_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1815832116 100.00 % 907916058 100.00 % 907916058 100.00 %
General Reads 1724658310 94.98 % 866356075 95.42 % 858302235 94.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9364334 0.52 % 4711261 0.52 % 4653073 0.51 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 81809472 4.51 % 36848722 4.06 % 44960750 4.95 %
Bisulfite_reads C2T 881275205 48.53 % 442681182 48.76 % 438594023 48.31 %
Bisulfite_reads G2A 852747439 46.96 % 428386154 47.18 % 424361285 46.74 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 467019318
Average Unique 51.44 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70571875729 38.48 % 27570378210 30.07 % 43001497519 46.89 %
Base Counts Overall C 19889561052 10.84 % 1738248530 1.90 % 18151312522 19.79 %
Base Counts Overall G 22243212641 12.13 % 19427700731 21.19 % 2815511910 3.07 %
Base Counts Overall T 68710141320 37.46 % 41987258345 45.79 % 26722882975 29.14 %
Base Counts Overall N 1984252974 1.08 % 975936042 1.06 % 1008316932 1.10 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9830564532876854
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 578141332



Mapping Quality

Mapping Quality Histogram
A27341_5_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A27341_5_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C4BC4ACXX_5_2
C2MEJACXX_2_2
C1V5EACXX_4_2
C4BC4ACXX_4_2
C2MEJACXX_1_2