/REMC/mapping_coverage/A27341_5_lane_gembs
BACK
SAMPLE A27341_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1720658425 |
100% |
151276088399 |
100% |
| Mapped |
1682719416 |
97.80 % |
147482187499 |
97.49 % |
| Passed |
936285632 |
54.41 % |
72838809099 |
48.15 % |
| NotPassed |
746433784 |
43.38 % |
74643378400 |
49.34 % |
| |
|
|
|
|
| LowMAPQ |
600639840 |
34.91 % |
60063984000 |
39.70 % |
| MateUnmapped |
37939009 |
2.20 % |
3793900900 |
2.51 % |
| Duplicate |
4742895 |
0.28 % |
474289500 |
0.31 % |
| BadOrientation |
276 |
0.00 % |
27600 |
0.00 % |
| LargeInsertSize |
60968 |
0.00 % |
6096800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
140989805 |
8.19 % |
14098980500 |
9.32 % |
| Unmapped |
37939009 |
2.20 % |
3793900900 |
2.51 % |
Base Level Counts
| Bases |
# |
% |
| Total |
93611429200 |
100% |
| Passed |
67542530332 |
72.15 % |
| Trimmed |
3884400080 |
4.15 % |
| Clipped |
921241429 |
0.98 % |
| Overlapping |
19851378672 |
21.21 % |
| LowQuality |
1411878687 |
1.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |